| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4488 |
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| Symbol | |
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| ID | 5612618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5492691 |
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| End bp | 5494232 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935465 |
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| Product | F0F1 ATP synthase subunit alpha |
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| Protein accession | YP_001476218 |
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| Protein GI | 157377618 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
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| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.157243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000010856 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAACTGA ATTCCACTGA AATCAGCGAT CTGATTAAAC AGCGGATCGA GCAGTTCGAA
GTCGTTAGTG AAACTCGCAA CGAAGGTACT ATCGTTGCAG TTAGTGACGG CATCATCCGC
ATCCACGGCC TAGCCGACGT GATGCAAGGT GAAATGATCG AGCTGCCTGG TAACCGTTTT
GCAATCGCGT TGAACTTAGA ACGTGATTCT GTCGGTGCCG TAGTAATGGG CCCTTATGCC
TCTTTGGCAG AAGGCGACAA AGTAAAAACA ACAGGCCGTA TTTTGGAAGT CCCTGTTGGT
AACGGTCTAT TAGGACGTGT TGTCAACACA TTGGGTGAAC CAATTGACGG TAAAGGACCT
ATCGAACACG ATGGTTTCTC ACCTGTTGAA GTAATCGCAC CAGGCGTTAT TGAACGTAAG
TCAGTAGATC AACCAGTGCA AACTGGTTAT AAAGCTGTTG ACTCTATGAT CCCTATCGGT
CGTGGACAGC GCGAATTGAT TATTGGTGAC CGTCAAATCG GTAAGACCGC TTTGGCGATC
GATGCCATTA TCAACCAAAA AGATTCAGGC ATTAAATGTG TATACGTAGC TGTAGGGCAA
AAAGCTTCTA CAATCGCTAA CGTGGTACGC AAGCTTGATG AGCACGGCGC TTTGGCGAAC
ACCATTGTTG TTGTTGCTAC AGCTTCTGAA GCTGCTGCAC TACAATACTT GGCTCCATAC
TCTGGCTGTT CAATGGGTGA GTACTTCCGC GACCGCGGTG AAGATTCACT TATTGTCTAT
GATGATCTGT CTAAGCAAGC AGTTGCTTAC CGTCAGATTT CATTGTTGCT AAAACGTCCA
CCAGGACGTG AAGCATACCC AGGTGATGTA TTCTATCTTC ACTCTCGTCT GTTAGAACGT
GCTTCACGTG TTAACGCTGA GTATGTTGAG AAGTTCACTA AAGGTGAAGT TAAAGGCCGT
ACCGGTTCTT TGACTGCTCT ACCGATTATT GAAACTCAAG CGGGTGATGT CTCTGCTTTC
GTACCGACTA ACGTAATTTC GATTACCGAT GGTCAGATCT TCCTTGAAAC TGACCTATTT
AACTCTGGAC TACGTCCTGC TGTTAACCCA GGTATTTCGG TTTCTCGTGT TGGTGGTGCA
GCGCAGACTA AGATCATCAA GAAACTGTCT GGTGGTATCC GTACCGCACT AGCACAGTAT
CGAGAGCTTG CAGCGTTCTC ACAGTTTGCA TCTGACTTAG ATGATGCAAC TCGTGCTCAG
CTTGAGCATG GTGAGCGTGT TACCGAACTA ATGAAGCAAA AGCAATATGC TCCTATGAGT
ATTGCCGATC AGTCTGTGTC TCTTTTTGCA GCTGAAAAAG GTTACTTAAA AAGTATTGAG
CTAGCTAAAA TCGGTGATTT CGAAGCGTCT CTGCTCTCTT TCATGAACAG CGAGCATGCT
GAGCTTATGA AGACCATCAA CGATACTGGC AGCTACAATG CCGACATCGA AGGTGAGTTG
AAGGCCAGTC TCGACAAGTT CGTTGAAACC CAAACCTGGT AA
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| Protein sequence | MQLNSTEISD LIKQRIEQFE VVSETRNEGT IVAVSDGIIR IHGLADVMQG EMIELPGNRF
AIALNLERDS VGAVVMGPYA SLAEGDKVKT TGRILEVPVG NGLLGRVVNT LGEPIDGKGP
IEHDGFSPVE VIAPGVIERK SVDQPVQTGY KAVDSMIPIG RGQRELIIGD RQIGKTALAI
DAIINQKDSG IKCVYVAVGQ KASTIANVVR KLDEHGALAN TIVVVATASE AAALQYLAPY
SGCSMGEYFR DRGEDSLIVY DDLSKQAVAY RQISLLLKRP PGREAYPGDV FYLHSRLLER
ASRVNAEYVE KFTKGEVKGR TGSLTALPII ETQAGDVSAF VPTNVISITD GQIFLETDLF
NSGLRPAVNP GISVSRVGGA AQTKIIKKLS GGIRTALAQY RELAAFSQFA SDLDDATRAQ
LEHGERVTEL MKQKQYAPMS IADQSVSLFA AEKGYLKSIE LAKIGDFEAS LLSFMNSEHA
ELMKTINDTG SYNADIEGEL KASLDKFVET QTW
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