| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4485 |
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| Symbol | atpC |
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| ID | 5612657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5489883 |
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| End bp | 5490311 |
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| Gene Length | 429 bp |
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| Protein Length | 142 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935462 |
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| Product | F0F1 ATP synthase subunit epsilon |
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| Protein accession | YP_001476215 |
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| Protein GI | 157377615 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) |
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| TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.541695 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000768605 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAGCCA TGACAGTACA ACTTGATATA GTAAGTGCAG AAAGTCGCAT ATATTCAGGC
CTTGTAGCAC ACCTACAAGT AACCGGTTCA GAAGGTGATC TAGGTGTTAT GCCTGGTCAC
GCGCCACTAC TGACACATAT CAAACCTGGC ATGGCACGCA TCGTCAAGCA AGATGGAAGT
GAAGAGGTGT TTTATCTTTC GGGTGGTATC CTGGAAGTTC AACCTTTTTC TGTTTCAGTA
TTGGCTGACG TCGTATTGCG TGCCGATGAG ATTGACGAGC AAGCAGCTGT AGAAGCTAAG
CGTCGTGCAG AAACCGCTCT TGCGGATGCT GGCGCCGACT TTAACTACGC AGCAGCAGCA
ATTGAGTTAG CTCAGGCTAT CGCTCAATTA CGCGTTGTCG AAACCATCAA GAAGAACATT
GCCAGATAA
|
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| Protein sequence | MAAMTVQLDI VSAESRIYSG LVAHLQVTGS EGDLGVMPGH APLLTHIKPG MARIVKQDGS
EEVFYLSGGI LEVQPFSVSV LADVVLRADE IDEQAAVEAK RRAETALADA GADFNYAAAA
IELAQAIAQL RVVETIKKNI AR
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