| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4482 |
|---|
| Symbol | |
|---|
| ID | 5612654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5484991 |
|---|
| End bp | 5485761 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640935459 |
|---|
| Product | DeoR family transcriptional regulator |
|---|
| Protein accession | YP_001476212 |
|---|
| Protein GI | 157377612 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000793967 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC GTAATACTCA ACAGCGTCGC CATAGCATTA TTAGCCTATT GACCGAGCAA
GGTGAGGTGA GTGTTGACGA GTTATCCTTA CGTTTCGAAA CCTCTGAAGT CACCATTCGT
AAAGATCTCA GTGCATTAGA GAAAACCGGG CTGCTGTTGC GTCGATATGG CGGCGCGGTG
GCGATACCCG ATGAGGTCAC TCAACAATTC ACCGCTAGGA TCGCACCCAA TAAGTTATCT
ATTGCCCAGG CTGCAGCTAA GCTGATTAAC GATCATAATC GAATCATCAT AGATAGCGGC
AGCACCACAT CGGGATTAGT CCGGGAGCTT AATGGTAAGA ATGGCTTGGT GGTGATGACC
AATTCATTGC AGCTGGCTAA TGCTATCCAT GAGCTTGAGA ATGAACCGAC ATTATTGATG
ACCGGTGGCA CCTGGGATCC TCATTCTGAG TCATTTCAGG GGCAGATAGC CGAGCAGGTA
TTGCGTTCCT ATAACTTTGA CCAACTCTTT ATTGGTGCAG ATGGCATAGA CCTTGAGCGC
GGCACAACCA CCTTCAATGA ACTTACCGGA CTGAGTAAGG TGATGGCAGA GGTTTCCCGT
GAGGTCGTGG TCATGCTCGA GTCAGAAAAA CTGGGCAGGC GAATTCCCAA CTTAGAGTTG
GCCTGGAGCA ATATCAGCGT GTTGGTAACC GATGAAAACT TACCAGCCGA GGCTGTTGAA
ACAATTTCAA ACCATGGGGT GCAGGTGATC CTGGCACCTC ATGTAAGTTA A
|
|---|
| Protein sequence | MNKRNTQQRR HSIISLLTEQ GEVSVDELSL RFETSEVTIR KDLSALEKTG LLLRRYGGAV
AIPDEVTQQF TARIAPNKLS IAQAAAKLIN DHNRIIIDSG STTSGLVREL NGKNGLVVMT
NSLQLANAIH ELENEPTLLM TGGTWDPHSE SFQGQIAEQV LRSYNFDQLF IGADGIDLER
GTTTFNELTG LSKVMAEVSR EVVVMLESEK LGRRIPNLEL AWSNISVLVT DENLPAEAVE
TISNHGVQVI LAPHVS
|
|---|
| |