| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4481 |
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| Symbol | |
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| ID | 5612960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5483097 |
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| End bp | 5484926 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935458 |
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| Product | glucosamine--fructose-6-phosphate aminotransferase |
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| Protein accession | YP_001476211 |
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| Protein GI | 157377611 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0449] Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains |
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| TIGRFAM ID | [TIGR01135] glucosamine--fructose-6-phosphate aminotransferase (isomerizing) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000322632 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGTGGAA TCGTTGGCGC TGTTGCGCAA AGAGATGTAG CTGAAATCTT AGTAGAAGGA
CTTAAGCGCC TCGAGTACCG AGGATATGAT TCGGCTGGTG TAGCGCTCAT TCAGGATGGT
ACGCTCAGCA GTACTCGCCG TGTAGGTAAA GTTCAGGAAC TTTCGGCTGC TTTAGATGCT
GCGCCATTAG CCGGTGGTAC AGGTATTGCT CATACCCGCT GGGCCACCCA CGGTGAGCCG
AGTGAGCGTA ATGCTCACCC ACACCAGTCT GAGGGTGATA TTGCCGTCGT ACATAACGGT
ATTATCGAAA ATCACAATAA GCTACGGGAA ATGCTTAAGG GTTTAGGTTA TACCTTTGCA
TCAGATACCG ATACCGAGGT TATCTGTCAC TTAGTGCACC ATGAGCTTAA GTCTAACGAT
AACTTACTTG CAGCCGTTCA AGCGACGGTA AAGCAGTTAG AGGGGGCCTA TGGCACCGTG
GTTATCGATC GTCGTGATAG CGAACGTATG ATCGTTGCCC GCAGCGGTAG CCCGCTGGTT
ATCGGTTATG GTTTGGGTGA GAACTTTGTC GCTTCCGATC AGCTTGCTCT TCTGCCGGTT
ACCCGCTCTT TTGCATTCCT GGAAGAGGGA GATGTAGCCG AGGTGATGCG CCGTGAAGTT
AATATCTTCG ATGTTGACGA TAATGCTGTC GAGCGTGAGG TCAAAGAGTC GGAAGTCACC
CATGACGCGG GTGATAAAGG TGAATACCGT CACTATATGC TGAAAGAGAT CTACGAGCAG
CCACGTGCAA TCGCACACAC GTTGGAAGGT CGTATTGCCG CTGGCACCGT ATTGGATTCA
GCATTTGGTG AAAACGCCGC CGAGTTCCTG AAAGATATTA AACATGTACA GATCATCGCC
TGTGGTACCA GTTATCATGC GGGTATGGCT GCACGCTACT GGTTAGAAGA CTGGGCCGGT
GTCTCTTGTA ATGTAGAGAT CGCATCTGAG TTTCGTTACC GTAAGTCGCA CCTGTTCCCG
AATAGCTTAC TCGTGACTAT TTCACAGTCC GGTGAAACCG CCGATACCTT AGCGGCACTT
CGTCTGGCTA AAGAGATGGG CTACAAGGCC ACTATGACCA TCTGTAATGC GCCGGGTTCA
TCTTTAGTGC GCGAATCAGA TATGGCCTAC ATGATGAAAG CGGGCGCCGA AATTGGTGTA
GCTTCGACTA AAGCGTTCAC CGTACAGCTT GCTGGCCTGT TGATGTTGAC CGCCGTTGTC
GGTCGTCATA ATGGCATGTC TGCCGATATG CAGGCGAAGA TCACCCAAAG TCTGCAATCT
ATGCCAGCTA AAGTTGAGCA GGCACTGGGG CTGGATGACG CCATTGCCGA GCTTGCCGAA
GATTTTGCCG ATAAACATCA TGCGCTATTT CTGGGCCGTG GCGATCAATA TCCTATTGCG
ATGGAAGGGG CGTTGAAGCT TAAAGAGATC TCTTACATTC ATGCCGAGGC CTATGCATCT
GGTGAGCTTA AGCATGGACC GCTCGCGTTA ATCGATGCCG ATATGCCAGT GATCGTGGTT
GCGCCAAACA ATGAGCTGTT AGAGAAGCTA AAATCCAACG TAGAAGAGGT ACGTGCCCGT
GGTGGCTTGA TGTATGTCTT CGCCGATGTC GATGCTGAGT TTGAGTCAGA TGACACCATG
AAGGTCATCC CTGTGCCTCA CTGCGATGAG TTTATGGCGG CGCTTATCTA CACTATCCCA
ATGCAGTTAT TGTCATACCA TGTGGCCTTA ATCAAAGGTA CAGACGTGGA TCAGCCTCGT
AACCTGGCTA AGTCTGTTAC TGTAGAGTAA
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| Protein sequence | MCGIVGAVAQ RDVAEILVEG LKRLEYRGYD SAGVALIQDG TLSSTRRVGK VQELSAALDA
APLAGGTGIA HTRWATHGEP SERNAHPHQS EGDIAVVHNG IIENHNKLRE MLKGLGYTFA
SDTDTEVICH LVHHELKSND NLLAAVQATV KQLEGAYGTV VIDRRDSERM IVARSGSPLV
IGYGLGENFV ASDQLALLPV TRSFAFLEEG DVAEVMRREV NIFDVDDNAV EREVKESEVT
HDAGDKGEYR HYMLKEIYEQ PRAIAHTLEG RIAAGTVLDS AFGENAAEFL KDIKHVQIIA
CGTSYHAGMA ARYWLEDWAG VSCNVEIASE FRYRKSHLFP NSLLVTISQS GETADTLAAL
RLAKEMGYKA TMTICNAPGS SLVRESDMAY MMKAGAEIGV ASTKAFTVQL AGLLMLTAVV
GRHNGMSADM QAKITQSLQS MPAKVEQALG LDDAIAELAE DFADKHHALF LGRGDQYPIA
MEGALKLKEI SYIHAEAYAS GELKHGPLAL IDADMPVIVV APNNELLEKL KSNVEEVRAR
GGLMYVFADV DAEFESDDTM KVIPVPHCDE FMAALIYTIP MQLLSYHVAL IKGTDVDQPR
NLAKSVTVE
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