| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4480 |
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| Symbol | |
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| ID | 5612959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5481783 |
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| End bp | 5482856 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640935457 |
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| Product | integrase, catalytic region |
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| Protein accession | YP_001476210 |
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| Protein GI | 157377610 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000214093 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCTTTT TTGATAGAAT AACCAAAGCT GCACATATTT TTCGATGGAA TAGAGAAGTT
ATGACCCAGA ACAGTAACGA AATCCGCAGT AAACTTGCAC TGCTTCAACT TGCTAAAGAA
CTCAATAGCA TCAGCAAAGC TTGCGATATT ATGGGATATA GTCGCGACAG TTATTACCGC
TTTAAAAAAC AATATGAAGA AGCCGGTGAG CGGGGATTAA TTAATTTATC GAGAAAGAAG
CCGGCATTAA AGAATCGAGT GTCTCAGGAA ATAGAAGACC AAGTTATCGA AATTGCACTC
GATTACCCTA ATTATGGCCA GGCTAAAGCC GCAGAAATTC TAACGGCCAG AGGTTGTGTC
ATCTCAGCCA GCGGGGTGAG AACAATATGG CTAAGACATA ACTTAGAAAC CAAGAAAAAC
AGATTACTCG CACTAAACAG TCGATTGAGA CAGCAAAACC ATCTGAGCTT CAAGGCTCAA
CACGACATGG AACAGCTCTA TAAACTGGAA CAAAATGAAT CAACATTAGA CTGCAAGTTC
CCTGGCGATG TCTGTGTTCA GGATACATTT AAAATTGCAG AGATTAACGG TCTTGGCCCG
GTATACCAGC ACACTTTTAT TGATGCTTAC AGCCAATACG CACACGCCGT TATTTCTACA
AGCAATGACT CCACTGTAGC GGCAGACTTT TTACTGGGGG CAGTTATTCC TTGGTACAGA
GAGAGCAATA TTCATATCAA TAGCATTCTG ACTGATAGGG GAGCTGAATT CTCAGGTAAG
AATAGTGTTC CCTTTCAGGA AGCAATGACT GAACTCGACA TAAACCACAT CCAAATGAGA
GCCTATAACG GCCCAGTAGT AAACGGTATG GCTTCACAGT TCCAACATCT GGCTTATAAC
GAGTTTTATG AACCATTCTT GAAAAAGAAC AAAGTCACTT CACTCGATAT ATTCAATGAA
AGTTTACGAA CCTGGTTAGA AAAATATAAC CATCAGTATG CGATTTCCGG TAGGTACACC
TTAGGAAAAA CTGCAATTGA GGTTTTACAG CTTAGCAAAC ATCTTATTAA GTAG
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| Protein sequence | MSFFDRITKA AHIFRWNREV MTQNSNEIRS KLALLQLAKE LNSISKACDI MGYSRDSYYR
FKKQYEEAGE RGLINLSRKK PALKNRVSQE IEDQVIEIAL DYPNYGQAKA AEILTARGCV
ISASGVRTIW LRHNLETKKN RLLALNSRLR QQNHLSFKAQ HDMEQLYKLE QNESTLDCKF
PGDVCVQDTF KIAEINGLGP VYQHTFIDAY SQYAHAVIST SNDSTVAADF LLGAVIPWYR
ESNIHINSIL TDRGAEFSGK NSVPFQEAMT ELDINHIQMR AYNGPVVNGM ASQFQHLAYN
EFYEPFLKKN KVTSLDIFNE SLRTWLEKYN HQYAISGRYT LGKTAIEVLQ LSKHLIK
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