| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4479 |
|---|
| Symbol | |
|---|
| ID | 5612958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5481377 |
|---|
| End bp | 5481583 |
|---|
| Gene Length | 207 bp |
|---|
| Protein Length | 68 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640935456 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001476209 |
|---|
| Protein GI | 157377609 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3205] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000217224 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA CAATCACCTT TGCAATACTA CATTTTAGCG TCGCATTCAC TGTTACTTAT
CTACTGACTG GTAGCGTCGT AATCGGTGGT GCCATTGCCC TCATCGAACC CGCCGTCAAT
ACCGTGGTTT TCTATTTCCA TGAGAAGGTA TGGCAGAGAA TTCAAAGTCA CTCTTCACCA
GACGCCTCAC TTAAAGTTGC CGCTTAA
|
|---|
| Protein sequence | MTKTITFAIL HFSVAFTVTY LLTGSVVIGG AIALIEPAVN TVVFYFHEKV WQRIQSHSSP
DASLKVAA
|
|---|
| |