Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4476 |
Symbol | |
ID | 5612796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5478248 |
End bp | 5479687 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640935453 |
Product | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein |
Protein accession | YP_001476206 |
Protein GI | 157377606 |
COG category | [C] Energy production and conversion |
COG ID | [COG0348] Polyferredoxin |
TIGRFAM ID | [TIGR02745] cytochrome c oxidase accessory protein FixG |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000640638 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000582733 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGCACAG AGTCTGAAAA AAAGGATTAT TCGAAGGCTA AACGAATCAA GATCCATCAA CCTGATGCAA ATAAGGCTGA CCGATTTAAC CCACGTAATC GAATATATGT TCGAGCCGTC GATGGGCTTT GGAGTCAGCT TCGAAGACGA TTAGGTTGGG TCGCCATGCT CTTTTTTCTT ATCTTACCCT GGATCCCCTG GGGTGACCGC CAAGCCGTTT GGTTTAATCT GGGCGAGCAG AAGTTTCATA TTTTCGGTTT GACCATTTGG CCTCAGGATC TAACGCTATT AGCTGCGCTT TTAATGATAG CCGCCTTTGG CTTATTCTTT ATTACGACTT ACCTTGGTAG GGTGTGGTGT GGTTACACTT GTCCTCAAAC GGTTTGGACG TTTATTTTCA TCTGGTTTGA AGAGAAGCTC GAAGGGGCCC GTAATAAGCG GATTAAATTG GATCAGATGC CCTGGAGTTT CAATAAACTT TGGCGAAAAA CGGCAAAACA CGCATCCTGG CTATTCATTT CATTATTAAC GGGAATGACG TTTGTCTCCT ACTTTGTGCC TACCAGTGAA GTATATCGTG ATGTATTTAC TTTAAGCGCG AGCGGCGGGA TCTACTTTTG GGTCGTACTC TTTACTCTCG CTACTTATGG TAATGCGGGC TGGATGAGGG AGATCATGTG TATTCATATG TGCCCCTATG CACGGTTCCA GGCTGCGATG TTCGATAAAA ATACCTTTAT TGTTGGCTAT GATAATAAGC GAGGTGAAAC ACGAGGGCCA AGATCACGTA AAGCCGATCC TAAAGAGATG GGGCTGGGTG ATTGTATCGA TTGCGACCTT TGTGTGCAGG TATGTCCCAC CGGCATCGAT ATTCGAAACG GCTTACAGTA TGAATGTATT AACTGTGGTG CCTGTATCGA TGCCTGCGAT ACGACCATGG AACGTATGGG GTACGATAAA GGACTCATCG CTTACACCAC CGAAAATAAA CTCGATGGAA TAAAACAGAA AGTGCTTAGA CCAAAGCTGG TTGGTTATGG TGTAGTTCTG ACTGTTATGA TCGTAATATT TGTCTATGCA AGCGCAACCA TAGCGCCTGT ACGCATCGAT GTTATTCGGG ATAGAAACCA GTTATTCAGA GAGAATAATG AGGGTTTGAT TGAAAATACT TTCACATTGA AGATTCTCAA TAAGACTGAA TCTGCTCATG ACTATATACT GGCTGTAGAA GGTTTACCTG AGTCTCAATG GTATGGGTTA CAACGAGTTC ATATCGCAGG GGGTGAGGTG TTAACTCTGC CTATTAGTAT TGCGGTTGAT CCGGTAGAGC TGTCAAGATC TATGACTAAA ATTGATTTCA GGGTGACTGC AGTGAATGCT GATACAAACA ATGGGGATGT GATCGAGGCA AAACAGGAGT CACGCTTCTT TAGTCAGTAG
|
Protein sequence | MSTESEKKDY SKAKRIKIHQ PDANKADRFN PRNRIYVRAV DGLWSQLRRR LGWVAMLFFL ILPWIPWGDR QAVWFNLGEQ KFHIFGLTIW PQDLTLLAAL LMIAAFGLFF ITTYLGRVWC GYTCPQTVWT FIFIWFEEKL EGARNKRIKL DQMPWSFNKL WRKTAKHASW LFISLLTGMT FVSYFVPTSE VYRDVFTLSA SGGIYFWVVL FTLATYGNAG WMREIMCIHM CPYARFQAAM FDKNTFIVGY DNKRGETRGP RSRKADPKEM GLGDCIDCDL CVQVCPTGID IRNGLQYECI NCGACIDACD TTMERMGYDK GLIAYTTENK LDGIKQKVLR PKLVGYGVVL TVMIVIFVYA SATIAPVRID VIRDRNQLFR ENNEGLIENT FTLKILNKTE SAHDYILAVE GLPESQWYGL QRVHIAGGEV LTLPISIAVD PVELSRSMTK IDFRVTAVNA DTNNGDVIEA KQESRFFSQ
|
| |