Gene Ssed_4470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4470 
Symbol 
ID5613152 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5458925 
End bp5460469 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content48% 
IMG OID640935440 
Productphosphoglyceromutase 
Protein accessionYP_001476200 
Protein GI157377600 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0696] Phosphoglyceromutase 
TIGRFAM ID[TIGR01307] 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000756408 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTACAC GCAAACGCCC CTTGGCATTG CTGATCCTCG ATGGCTGGGG TTACCGTGAA 
AACACGCAAA AAAATGCGGT ATACCACGCT AACACTCCAG TATTGGATCG ACTCAACGCC
CAATATCCAA ACAGCTTGAT TTCCGGCTCT GGCTTAGATG TCGGTTTACC CGATGGTCAG
ATGGGCAACT CAGAAGTTGG TCATATCAAT ATCGGCTCAG GTCGCATTGT CTATCAAGAA
CTTACCCGTA TTGGTAAAGC GATTGAAGAT GGTGAATTTG ATAAAAATCA GGCCTTAGTC
GAGTCCATAG ATAAGGCCAT CGCTAACCAA GGTGCTGTAC ACATTATGGG GCTACTTTCC
CCGGGTGGTG TACATAGTCA CGAAAGCCAC ATTGAAGCCA TGTGTCGACT CGCTGTAGCA
CGTGGAGCCA AGCAGGTTTA CCTGCATGCA TTTCTCGATG GACGTGACAC TCCTCCCCGT
AGTGCGAAGG GCAGCTTAGC TCATTTTGAT GATCTGTTTA CTACATTAGG CACTGGTCGC
GTCGCCTCGG TCATAGGCCG TTACTATGCA ATGGATCGTG ATAACCGCTG GGATCGTGTG
TCTCAAGCCT ACGAGCTTAT TACCGAAGGT AAGTCATTAC ATCAGTACTC TAACGCCGTA
GAAGCACTCG AGGCAGCCTA TGCTCGTGAC GAAAATGATG AGTTCGTCGG CAGCTCTGCC
ATCCTTGACG CTCAAGGAGA TAGTGCTCAG CTAGCAGATG GCGATGCGCT GATCTTTATG
AACTTCCGCG CAGACAGAGC CCGTCAAATC ACTCGCAGTT TTGTTGATGC TGACTTCGAC
GGCTTCGAGC GTAACGTTAC GCCAAAAGCT CATTTTGTCA TGCTGACTGA GTACGCCGCC
GACATTAAAG CCGCCATCGC CTACCCATCG ACAAATTTGG TTAATACCTT AGGTGAAGCG
CTTCAAGACA GCGATAAGAC TCAGCTTCGT ATTTCTGAAA CTGAAAAGTA CGCTCATGTG
ACCTTCTTCT TTAACGGCGG GAAGGAAGAG CCATTTAAAG GTGAAGATCG AATATTAATA
CAATCACCAA AAGTGGCTAC CTACGACCTT CAGCCAGAGA TGAGCTCTGC AGAGTTAACC
GACAAGTTGG TTGAGGCGAT CGAGTCAACA AAATATGATG TCATTATCTG TAACTACCCT
AATGGCGATA TGGTTGGCCA TACCGGTAGC TTCGATGCGG CAGTTAAAGC CTGTGAAGCC
GTGGATACTT GTATCGGCCG TGTAGTCGAT GCACTAGCAA AAGTTGATGG TGAATGCTTA
ATCACAGCCG ATCATGGTAA TGCCGAGCAG ATGACCGATG AACAGACGGG TCAGGCACAC
ACGGCTCATA CCAGTGAATT AGTCCCGTTA ATCTATGTCG GACGTAACGG CAGCATAGAA
AATGATGGAC GATTAAGCGA TCTTGCCCCA ACCATGTTAA CCTTGATGGG AGAAGAAGTG
CCGTCAGAGA TGACTGGACG CTCAATAATT AAACTCGATG AGTAA
 
Protein sequence
MTTRKRPLAL LILDGWGYRE NTQKNAVYHA NTPVLDRLNA QYPNSLISGS GLDVGLPDGQ 
MGNSEVGHIN IGSGRIVYQE LTRIGKAIED GEFDKNQALV ESIDKAIANQ GAVHIMGLLS
PGGVHSHESH IEAMCRLAVA RGAKQVYLHA FLDGRDTPPR SAKGSLAHFD DLFTTLGTGR
VASVIGRYYA MDRDNRWDRV SQAYELITEG KSLHQYSNAV EALEAAYARD ENDEFVGSSA
ILDAQGDSAQ LADGDALIFM NFRADRARQI TRSFVDADFD GFERNVTPKA HFVMLTEYAA
DIKAAIAYPS TNLVNTLGEA LQDSDKTQLR ISETEKYAHV TFFFNGGKEE PFKGEDRILI
QSPKVATYDL QPEMSSAELT DKLVEAIEST KYDVIICNYP NGDMVGHTGS FDAAVKACEA
VDTCIGRVVD ALAKVDGECL ITADHGNAEQ MTDEQTGQAH TAHTSELVPL IYVGRNGSIE
NDGRLSDLAP TMLTLMGEEV PSEMTGRSII KLDE