Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4465 |
Symbol | |
ID | 5613245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5454623 |
End bp | 5455075 |
Gene Length | 453 bp |
Protein Length | 150 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640935435 |
Product | NLP/P60 protein |
Protein accession | YP_001476195 |
Protein GI | 157377595 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.231412 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTAAAAC CTTTACTCAT CCTCTTGTCT ATATTGTTGT TGAGTGCCTG TGGGAGTCTT CCTCCCGAAC CAGATACTAA AGCGTCGAAT CAGTTAGAAC GTCAGCTAAT GGCATTTCAT CAAGAGTGGC GCGGTACACC ATATCGACTG GGGGGAATGA ACAAACGAGG CGTCGATTGC TCCGGTTTCG TCTATCTGGC CTATAAAGAG TTGTTGGGAC AAGCGATACC CAGAACCACT TCTGAGCAAT TACATTCGGG TGCAAAAGTG TCCAAGGACA GGCTCAATGC GGGCGATCTG GTGTTCTTTA AAACCGGTTG GACTACACGT CATGTGGGCA TCTATTTGAG TGATTCTAAA TTCCTGCATG CATCGACGAG TCAAGGGGTG ATGATCTCGA CACTGGAAAA TAGCTACTGG AAACGAAAAT ATTGGTTATC CAGACGTTTA TAA
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Protein sequence | MLKPLLILLS ILLLSACGSL PPEPDTKASN QLERQLMAFH QEWRGTPYRL GGMNKRGVDC SGFVYLAYKE LLGQAIPRTT SEQLHSGAKV SKDRLNAGDL VFFKTGWTTR HVGIYLSDSK FLHASTSQGV MISTLENSYW KRKYWLSRRL
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