| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4461 |
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| Symbol | |
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| ID | 5613388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5449737 |
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| End bp | 5450471 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935431 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001476191 |
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| Protein GI | 157377591 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG4555] ABC-type Na+ transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.623703 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTAAGG TTGCTAACCT GTCTAAGCGC ATCGGTGAGG TGCAAGCCCT GGATGACTTA
AGCTTTATTG CTAAAGATGG CCAGATAACC GGCCTGCTTG GGCCCAATGG CGCAGGGAAA
ACCACCTGCT TAAGAACCGT TTTTGGATTA CTGCAGGCCG ATATGGGTAG TGCAGAGATC
GATGGTATCG ATGTCGCTAA ATCTCCTATC GAAGCCAAAC AGCAACTCGG TCTGTTCCCT
GACCCGTTTG GACTCTATGA ACGTCTTAGC CCGAGAGAAT ATGTCAGTTA TTTCGCCGAA
CTCAATGGGT TATCACGCGT CGATGCCAAA GCCGCCACGG CTAAGGTACT CAGTCAGCTC
CATATGGATG ACATTGCCGA CCGACGCTGT AAAGGGTTCT CTCAAGGTCA GAGAATGAAA
ACCGCACTCG CACAGGCCAT AGTCCACCAG CCAACCAACA TCATTCTCGA TGAGCCGACC
CGAGGTTTAG ATGTCATGAG TACCCGGGTG CTCAGAGATC TGCTAAAAGA GTTAAAAGCA
CATGGACACT GCGTGCTTTT CTCCAGCCAT GTGATGCAGG AGGTCGCCGC CCTGTGCGAT
CAGGTGATTG TTATGGCACA AGGTAAAGTG GTCGCCATAG GCAGTCCGGA TGAGCTTTGT
GAGCAAACCG GAAAAGACTC CCTCGAGGAT GCCTTCATTC AATTGATAGG CACAGATGAG
GGCATCGCTG CATGA
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| Protein sequence | MIKVANLSKR IGEVQALDDL SFIAKDGQIT GLLGPNGAGK TTCLRTVFGL LQADMGSAEI
DGIDVAKSPI EAKQQLGLFP DPFGLYERLS PREYVSYFAE LNGLSRVDAK AATAKVLSQL
HMDDIADRRC KGFSQGQRMK TALAQAIVHQ PTNIILDEPT RGLDVMSTRV LRDLLKELKA
HGHCVLFSSH VMQEVAALCD QVIVMAQGKV VAIGSPDELC EQTGKDSLED AFIQLIGTDE
GIAA
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