| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4459 |
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| Symbol | |
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| ID | 5613386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5445862 |
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| End bp | 5447658 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935429 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001476189 |
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| Protein GI | 157377589 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.704147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTCG AGCAGTATCA TTTAACACGT TTAATCAAAC AGCAAAGCCA GAAACTTGGT
GAAGCTATCG CGCTCGAAGG GTACGAAATG GCGGCCCCTT GGGATCTGGT GAGTTGGAGC
TCATTTGATA ATATCAACGC CAAGGTTGCC CAGGCATTGA TTCAATTTGG TATCGAAGTC
CAGGATCGTA CCGTTATTTT GTCGCAAAAT TGTCCCCAGT GGGCTTGTGC AGATATCGGT
AGTCTCAAAG CGCGTACAGT TGTTGTGCCT ATCTACCCGA CGAGTACCTT CGAGCAAGCT
AGTTATATCG TGAATGATGC CAAGGCGAAG CTGATATTTG TCGGCGATAA AGCGCATTAT
GAGATGGCCT GTATGCTGGT TCAGCATTGC GAAAGCTTAA CTCATATCGT GGTATTCGAT
AAAAGTGTTG TCCTTAAGGA ATATGAGAGC CATATCTACT TTGACGATCT TCTCACTGAG
ACGCATTCTG CCGAAGTGAT CGCCGAATTG GATAAGCGTA TAGAAGAGGC CGAGTTAGAT
GATCTTCTCT CGTTAATCTA TACCTCAGGT ACGACAGGTG ATCCTAAAGG TGTAATGATG
GATTACCGTA ATATCGCCTC TATGATCGAG AAGCATGATA AGGTGCTGGC CTTCACTCCC
GGTGATGTTT CTCTCGCTTT CTTACCTCTA AGTCACGTGT TTGAGCGTGA TTGGAGTTTC
TACGTTTTGA GCCGTGGAGG CCATAACGTC TATCTGCAAA ATCCGATGGC AGTAAAAGAG
GCTATCGTTG CGGTTCGTCC TCATACACTC TGTGTCGTGC CCAGATTCTT AGAAAAAGTG
TACAGCGCCG TCCAAGATAA AGTGATAAAA GCACCAGAGT TAAGGCAGAA GATGTTTACC
TGGGCGATGT CTGTCGGACA TCGTCAGTCT GAAGTCGGTC AGGGGCGACA TAAGGCGTCT
TTGGGTCTGA GCTTGCAGTG GAAGCTGGCC GATAAGCTGG TTTTTAGTAA GCTCAAGCAA
GTACTGGGTG GACGTCTTAA GTTTATGCCA TGTGGTGGCG CTGCTTTAGA CCCTAACGTC
AGTGCTTTTT TCCAGAGTAT TGATGTACCT GTTTTATGTG GTTACGGCAT GACCGAAACC
AATGCCACTA TCACCTGTAA TACCTTGTCT AACCGAGTGC CTGGATCTAA TGGTAAGCCA
TTGCCTGATA TGGAAATTAA GTTAGGCAAA GATAATGAGA TCATGGTTCG CGGCGGAACT
GTGATGCGCG GTTATTATAA TCGCCCGGAA GATACTGCCG AAGCATTCGA GGATGGCTGG
CTGAAAACCG GCGATGCGGG TCGTATCGAT GAAGAGGGGA ACTTGTTCAT CACCGACCGA
ATTAAAGAGT TGATGAAAAC CTCAAATGGT AAGTATATCG CTCCTCAACG TGTCGAAGGT
AAGGTGGGAT GTTGTCCTTT CATCGAACAG GTTGCCATCG TAGCCGATGC GAAAAACTAT
GTGACGGCCC TGATTGTGCC AGCCTTCGAA GCGCTCGAAG AGTGGGCGAA AGAGAAAGGC
ATTCACTATG AGTCGCCGAT GGAGTTGTTG CGTAACAGCC GTGTGGTAGA GCATTTCGAG
AATCGTCTTA AGGAGCTGCA GTCAGATCTG GCAGGATTTG AGAAGATTAA AAAGTTTACC
CTGTTACCCG AGGCCTTCTC AATGGAAGCG GGTCTGATCA CTCCGACGAT GAAGCTGCGT
CGTAAGGTTA TTTACAATAA GTATGCCCGT GAGATCAATG CGATGTACGC GAGATAG
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| Protein sequence | MSLEQYHLTR LIKQQSQKLG EAIALEGYEM AAPWDLVSWS SFDNINAKVA QALIQFGIEV
QDRTVILSQN CPQWACADIG SLKARTVVVP IYPTSTFEQA SYIVNDAKAK LIFVGDKAHY
EMACMLVQHC ESLTHIVVFD KSVVLKEYES HIYFDDLLTE THSAEVIAEL DKRIEEAELD
DLLSLIYTSG TTGDPKGVMM DYRNIASMIE KHDKVLAFTP GDVSLAFLPL SHVFERDWSF
YVLSRGGHNV YLQNPMAVKE AIVAVRPHTL CVVPRFLEKV YSAVQDKVIK APELRQKMFT
WAMSVGHRQS EVGQGRHKAS LGLSLQWKLA DKLVFSKLKQ VLGGRLKFMP CGGAALDPNV
SAFFQSIDVP VLCGYGMTET NATITCNTLS NRVPGSNGKP LPDMEIKLGK DNEIMVRGGT
VMRGYYNRPE DTAEAFEDGW LKTGDAGRID EEGNLFITDR IKELMKTSNG KYIAPQRVEG
KVGCCPFIEQ VAIVADAKNY VTALIVPAFE ALEEWAKEKG IHYESPMELL RNSRVVEHFE
NRLKELQSDL AGFEKIKKFT LLPEAFSMEA GLITPTMKLR RKVIYNKYAR EINAMYAR
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