| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4454 |
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| Symbol | |
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| ID | 5613438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5442504 |
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| End bp | 5443181 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935424 |
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| Product | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase |
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| Protein accession | YP_001476184 |
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| Protein GI | 157377584 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4229] Predicted enolase-phosphatase |
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| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR01691] 2,3-diketo-5-methylthio-1-phosphopentane phosphatase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTATCA GAGCCATAGT TGTAGATACA GCAGGTACGA CAACCGATCT TAGCTTTATT
AAGGACACGC TTTTTCCTTA TTCAGCCAAA GCCTTACCCG ACTTTCTTAA AGAAAATGAG
CACAATGTGC TGGTAGAAAA TTGCATCTGT GATGTCAGAG ATATCGCGTT AGAGCCAGAG
GCAACGCTGG AGCGAGTCAT CGAGATCCTG CAACAATGGG TTGCCGAAGA CCGCAAATCG
ACACCACTTA AGACACTTCA AGGCCTTATC TGGAAACAAG GCTATGCCAA AGGTGAATTT
ACCGGTCATA TTTTCCCTGA CTTTATCGAT GCAATCGAAG GTATTAAGCA GCAAAATATG
CGCCTCTATA GTTTCTCTTC CGGTTCGGCC GAAGCGCAAA AGCTGCTTTT CAGCCACAGC
GATGCTGGCG ATCTAACACC TAATTTTGAC GGTCACTTCG ACACTCGTAC CGGTAATAAA
CTGTTTAAGC AGGCTTACTG CAACATCATT AACACCATCA GCTTAGCCCC TAAGCAGGTG
CTGTTTATTT CGGATGTGAT CGAAGAGCTC AAAGCCGCAG AAGAAGCTGG CATGCGTACC
CTGCAGATGG TTCGCACTCC AGGTCAGCGC ACCGGAACAT ATAAGCAGAT CAGCAGCTTC
GCTGAGCTCA CTTTCTAA
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| Protein sequence | MGIRAIVVDT AGTTTDLSFI KDTLFPYSAK ALPDFLKENE HNVLVENCIC DVRDIALEPE
ATLERVIEIL QQWVAEDRKS TPLKTLQGLI WKQGYAKGEF TGHIFPDFID AIEGIKQQNM
RLYSFSSGSA EAQKLLFSHS DAGDLTPNFD GHFDTRTGNK LFKQAYCNII NTISLAPKQV
LFISDVIEEL KAAEEAGMRT LQMVRTPGQR TGTYKQISSF AELTF
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