Gene Ssed_4449 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4449 
Symbol 
ID5610915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5436144 
End bp5437370 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content55% 
IMG OID640935419 
Productimidazolonepropionase 
Protein accessionYP_001476179 
Protein GI157377579 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1228] Imidazolonepropionase and related amidohydrolases 
TIGRFAM ID[TIGR01224] imidazolonepropionase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTGGG ATCAGGTCTG GATTGACGTC AACGTAGCGA CAATGTCTCC TTCTGTATCA 
GCGCCTTACG GAGCGATAAC CGATGCAGCT GTTGCGGTAG AAAAAGGCCG AATTGCCTGG
ATTGGCCTCC GTTCCGAGCT GCCCGAATTC GATGTTCTGT CAACACCGGT TTACAGGGGG
AAAGGCGCCT GGATAACCCC GGGCCTTATC GACGCTCACA CCCATTTAGT GTTCGCCGGT
AACCGGGCCA ACGAGTTTGA GCTTCGCCTG CAGGGCGCCA GCTATGAAGA GATTGCCCGT
AGCGGCGGTG GCATCATCTC CACCGTTAAA GCCTGCCGTG AAGCCAGCGA AGGCGAGCTC
TTTGAGCTGG GCCGAAAACG TCTCAACGCC CTGGCGAAAG AGGGCGTGAC CACGGTCGAG
ATAAAATCCG GCTATGGCCT GGAAACAGAG ACAGAACTCA AACTGCTGCG CGTCGCCCGC
GAGCTCGGTA AGCATCATCA CGTCGATGTG AAAACCACCT TCTTAGGGGC TCATGCCATA
CCGCCAGAGT ATAAAGACAA CGCAGAAACC TATGTGGACT TAGTGATTGA CGAAATGCTG
CCCGCCGTTA TCGAGGAAAA CCTTGCCGAT GCGGCCGACG TCTTCTGTGA AAATATCGCC
TTCAGTGTCG AGCAGACCGA GCGGGTATTA ACCGCAGCCA AAGATGCCGG GCTCGATATC
AAGCTTCACG CCGAGCAACT CTCTAATCTG GGAGGTTCGG CTATGGCCGC CAGGCTAGGC
GCCAAATCGG TGGATCATAT CGAATACCTG GACGAGACCG GAGTAAAAGC CCTGAGTCAA
AGTGGCACCT GCGCCACCCT GCTCCCCGGT GCCTTCTACT TTCTGCGTGA GACTCAGATG
CCACCGATTG AGCTGCTGCG TAAGCATAAG GTACCCATGG TTCTGGCCAG TGACTACAAC
CCGGGATCGT CGCCGCTCTG CTCGAGTCTG TTAATGCTCA ACATGGGCTG CACCCTGTTC
CGCCTGACAC CAGAGGAGGC GCTTGCGGGT ATGACACGCA ATGCCGCCAA GGCATTAGGG
GTAGAGGACA ACGTAGGTGT CCTTGAAGTT GGGATGCAGG CTGATTTCTG TTTGTGGGAT
ATCACTACAC CGGCTCAGCT TTCCTACTCA TATGGCGTAG GTGTGTGCCT TGAGGTGGTC
AAATCAGGAC AATTGGTACA CCAGTAA
 
Protein sequence
MSWDQVWIDV NVATMSPSVS APYGAITDAA VAVEKGRIAW IGLRSELPEF DVLSTPVYRG 
KGAWITPGLI DAHTHLVFAG NRANEFELRL QGASYEEIAR SGGGIISTVK ACREASEGEL
FELGRKRLNA LAKEGVTTVE IKSGYGLETE TELKLLRVAR ELGKHHHVDV KTTFLGAHAI
PPEYKDNAET YVDLVIDEML PAVIEENLAD AADVFCENIA FSVEQTERVL TAAKDAGLDI
KLHAEQLSNL GGSAMAARLG AKSVDHIEYL DETGVKALSQ SGTCATLLPG AFYFLRETQM
PPIELLRKHK VPMVLASDYN PGSSPLCSSL LMLNMGCTLF RLTPEEALAG MTRNAAKALG
VEDNVGVLEV GMQADFCLWD ITTPAQLSYS YGVGVCLEVV KSGQLVHQ