| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4448 |
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| Symbol | |
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| ID | 5610914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5435247 |
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| End bp | 5435948 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640935418 |
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| Product | histidine utilization repressor |
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| Protein accession | YP_001476178 |
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| Protein GI | 157377578 |
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| COG category | [K] Transcription |
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| COG ID | [COG2188] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02018] histidine utilization repressor, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAACGC CCAAGTTTGC AGAGATAAAG CAGTATATTT TAGCCCGCAT CGAATCCGGT
GAATGGGAGG AGCATAGCCG TGTTCCCTCA GAGAACCAGA TGGCTGAGCT GTTTGAATGC
AGCCGAATGA CGGCGCGCCG TGCACTGACG GAATTGACCG ATGATGGTGT GTTAGAGCGC
TCTCAGGGCC TGGGTACCTT CGTCGCCGAG CTTAAATCTC AGTCCTCTAT GATGGCCATT
CGCAATATTG CCGATGAAAT TAAAGACAGG GGCCATGGCT ATAGCGTTAA ACAGCTTGAA
CTGACTCAAA CCGAAGCGAC AGCACCCATA GCCATCGCCT TGGGGCTGGA GACGGGAACT
CAGGTCTTCT ACTCGGTGTT GGTGCATTGC GAGCAGGGCG TGCCTCTGCA GCTGGAGGAG
CGTTTCGTTA ATCCAAAACT GGTGCCCGAT TACCTGCTGC AGGACTTTAC ACTGCAGACT
CCTCACGAAT ATCTGTCACA GGTTGCCCCC CTTACCGAGG CGCGCCATAC CTTAGAAGCC
GTGGTGGCCA ACGAACATAA TAAAAAACAT CTGGAGATAG AGGCGAGTGA GCCCTGTTTG
CAGATCATTC GTCGTACCTG GTCGCGCAAG GGCATGGTGA GCTATGCCAG ACTGATCCAT
CCCGGGACAC GATTCAGGTT AGGTGGTCAT CTGACGTTCT AA
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| Protein sequence | MATPKFAEIK QYILARIESG EWEEHSRVPS ENQMAELFEC SRMTARRALT ELTDDGVLER
SQGLGTFVAE LKSQSSMMAI RNIADEIKDR GHGYSVKQLE LTQTEATAPI AIALGLETGT
QVFYSVLVHC EQGVPLQLEE RFVNPKLVPD YLLQDFTLQT PHEYLSQVAP LTEARHTLEA
VVANEHNKKH LEIEASEPCL QIIRRTWSRK GMVSYARLIH PGTRFRLGGH LTF
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