Gene Ssed_4446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4446 
Symbol 
ID5610934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5431866 
End bp5433398 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content54% 
IMG OID640935416 
Producthistidine ammonia-lyase 
Protein accessionYP_001476176 
Protein GI157377576 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCATT TAATTTTAAA CCCTGGAACT CTGACCCTGT CACAAATCCG CGAGATCAGT 
CGTGGAAAAG TAAGCCTGGA GCTTGCCGAT AGTGCGATTA ATGATATCAA CACCAGTGCC
GGTTTAGTCC AGCAGGTGTT AGATGAAGGC CGCACGGTTT ATGGTATCAA CACTGGCTTC
GGCCTGCTGG CGAACACTAA GATCGCGGCC GATGATCTGC AGTTGCTACA GCGCTCAATT
GTGTTGTCAC ACGCCGCAGG TACCGGCCAA TATATGCAAG ATGCGACCGT GCGCTTGATG
ATGGTATTGA AGATCAACTC ATTGAGTCGC GGCTTCTCGG GCATTCGTCT CGAGGTGATT
AACTTCCTTA TCGCATTGGT TAACGCAGAA GTTTACCCAT GTGTACCGGA AAAAGGGTCC
GTGGGCGCAT CGGGTGACTT GGCTCCTTTG GCTCATATGT GCCTGCCGTT ACTCGGCGAG
GGTGAGATGA GCTACAAGGG GCAGATTTTG AGTGCCAAAG AGGGTCTGGA GATCGCCGGT
CTTAAGCCTA TCGAACTTGC CGCTAAAGAG GGCCTGGCCC TGCTTAATGG TACACAGGCA
TCGACGGCGT TAGCCTTAGA GGGCTTGTTT AACGCCGAAG ATCTATTCGC GGCCAGCTCA
GTCATCGGTG CGATGAGCGT CGAAGCTGCC ATGGGCAGTC GTAGTCCGTT CGATTCCCGC
ATCCACGCAG CCCGTGGACA GAAGGGGCAG ATCGATTCGG CTGCACTGTT CCGCCTCCTG
TTAGGCGATG AGTCTGAGAT CAGCTTGAGT CATGTGGACT GTGAGAGGGT GCAAGATCCT
TACTCGTTGC GTTGTCAGCC CCAGGTACTC GGTGCCTGTT TAACCCAAAT TCGTCATGCT
GCTGAGGTGC TTGGCACGGA AGCGAACGGC GTTACCGATA ACCCACTCGT GTTCCAGGAT
ACCGGAGACA TCATCTCGGG GGGGAACTTC CACGCTGAGC CTGTTGCCAT GGCGGCTGAT
AACTTGGCGA TAGCTCTTGC CGAGTTGGGC TCTATCGCCG AGCGTCGTAT CGCACTGCTC
ATCGACCCTA ACTTGTCTAT GCTACCTCCG TTCCTGGTGG AAAATGGTGG GGTGAACTCT
GGCTTCATGA TCGCCCAAGT GACAGCGGCG GCGCTGGCAT CGGAGAACAA GACCTATGCT
CATCCGGCGT CTGTCGATAG TTTACCGACC TCGGCAAACC AGGAAGACCA TGTGTCTATG
GCGACGTTCG CGGCGCGTCG TCTGCGTGAT ATGACTGAAA ATACCCGCGG TGTCTTGGCT
ATCGAGTTGC TGGCATCGGC ACAGGGGCTG GATTTCCGTG CACCACTTCA GCCGAGTGTT
GTTGTCGCTA AGGCGAAGGC CGAAATACGT GAGTTGGTAA CTTACTACGA TAAGGATCGT
TTCTTCGGCC CGGATATCGA AGCGGCAACT GACCTGCTTA TCACGGCAAG CTTCAATGCT
TACCTGCCAG ACGGGATCCT GCCAAGTTTG TAA
 
Protein sequence
MSHLILNPGT LTLSQIREIS RGKVSLELAD SAINDINTSA GLVQQVLDEG RTVYGINTGF 
GLLANTKIAA DDLQLLQRSI VLSHAAGTGQ YMQDATVRLM MVLKINSLSR GFSGIRLEVI
NFLIALVNAE VYPCVPEKGS VGASGDLAPL AHMCLPLLGE GEMSYKGQIL SAKEGLEIAG
LKPIELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGAMSVEAA MGSRSPFDSR
IHAARGQKGQ IDSAALFRLL LGDESEISLS HVDCERVQDP YSLRCQPQVL GACLTQIRHA
AEVLGTEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIALAELG SIAERRIALL
IDPNLSMLPP FLVENGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM
ATFAARRLRD MTENTRGVLA IELLASAQGL DFRAPLQPSV VVAKAKAEIR ELVTYYDKDR
FFGPDIEAAT DLLITASFNA YLPDGILPSL