Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4446 |
Symbol | |
ID | 5610934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5431866 |
End bp | 5433398 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640935416 |
Product | histidine ammonia-lyase |
Protein accession | YP_001476176 |
Protein GI | 157377576 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCATT TAATTTTAAA CCCTGGAACT CTGACCCTGT CACAAATCCG CGAGATCAGT CGTGGAAAAG TAAGCCTGGA GCTTGCCGAT AGTGCGATTA ATGATATCAA CACCAGTGCC GGTTTAGTCC AGCAGGTGTT AGATGAAGGC CGCACGGTTT ATGGTATCAA CACTGGCTTC GGCCTGCTGG CGAACACTAA GATCGCGGCC GATGATCTGC AGTTGCTACA GCGCTCAATT GTGTTGTCAC ACGCCGCAGG TACCGGCCAA TATATGCAAG ATGCGACCGT GCGCTTGATG ATGGTATTGA AGATCAACTC ATTGAGTCGC GGCTTCTCGG GCATTCGTCT CGAGGTGATT AACTTCCTTA TCGCATTGGT TAACGCAGAA GTTTACCCAT GTGTACCGGA AAAAGGGTCC GTGGGCGCAT CGGGTGACTT GGCTCCTTTG GCTCATATGT GCCTGCCGTT ACTCGGCGAG GGTGAGATGA GCTACAAGGG GCAGATTTTG AGTGCCAAAG AGGGTCTGGA GATCGCCGGT CTTAAGCCTA TCGAACTTGC CGCTAAAGAG GGCCTGGCCC TGCTTAATGG TACACAGGCA TCGACGGCGT TAGCCTTAGA GGGCTTGTTT AACGCCGAAG ATCTATTCGC GGCCAGCTCA GTCATCGGTG CGATGAGCGT CGAAGCTGCC ATGGGCAGTC GTAGTCCGTT CGATTCCCGC ATCCACGCAG CCCGTGGACA GAAGGGGCAG ATCGATTCGG CTGCACTGTT CCGCCTCCTG TTAGGCGATG AGTCTGAGAT CAGCTTGAGT CATGTGGACT GTGAGAGGGT GCAAGATCCT TACTCGTTGC GTTGTCAGCC CCAGGTACTC GGTGCCTGTT TAACCCAAAT TCGTCATGCT GCTGAGGTGC TTGGCACGGA AGCGAACGGC GTTACCGATA ACCCACTCGT GTTCCAGGAT ACCGGAGACA TCATCTCGGG GGGGAACTTC CACGCTGAGC CTGTTGCCAT GGCGGCTGAT AACTTGGCGA TAGCTCTTGC CGAGTTGGGC TCTATCGCCG AGCGTCGTAT CGCACTGCTC ATCGACCCTA ACTTGTCTAT GCTACCTCCG TTCCTGGTGG AAAATGGTGG GGTGAACTCT GGCTTCATGA TCGCCCAAGT GACAGCGGCG GCGCTGGCAT CGGAGAACAA GACCTATGCT CATCCGGCGT CTGTCGATAG TTTACCGACC TCGGCAAACC AGGAAGACCA TGTGTCTATG GCGACGTTCG CGGCGCGTCG TCTGCGTGAT ATGACTGAAA ATACCCGCGG TGTCTTGGCT ATCGAGTTGC TGGCATCGGC ACAGGGGCTG GATTTCCGTG CACCACTTCA GCCGAGTGTT GTTGTCGCTA AGGCGAAGGC CGAAATACGT GAGTTGGTAA CTTACTACGA TAAGGATCGT TTCTTCGGCC CGGATATCGA AGCGGCAACT GACCTGCTTA TCACGGCAAG CTTCAATGCT TACCTGCCAG ACGGGATCCT GCCAAGTTTG TAA
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Protein sequence | MSHLILNPGT LTLSQIREIS RGKVSLELAD SAINDINTSA GLVQQVLDEG RTVYGINTGF GLLANTKIAA DDLQLLQRSI VLSHAAGTGQ YMQDATVRLM MVLKINSLSR GFSGIRLEVI NFLIALVNAE VYPCVPEKGS VGASGDLAPL AHMCLPLLGE GEMSYKGQIL SAKEGLEIAG LKPIELAAKE GLALLNGTQA STALALEGLF NAEDLFAASS VIGAMSVEAA MGSRSPFDSR IHAARGQKGQ IDSAALFRLL LGDESEISLS HVDCERVQDP YSLRCQPQVL GACLTQIRHA AEVLGTEANG VTDNPLVFQD TGDIISGGNF HAEPVAMAAD NLAIALAELG SIAERRIALL IDPNLSMLPP FLVENGGVNS GFMIAQVTAA ALASENKTYA HPASVDSLPT SANQEDHVSM ATFAARRLRD MTENTRGVLA IELLASAQGL DFRAPLQPSV VVAKAKAEIR ELVTYYDKDR FFGPDIEAAT DLLITASFNA YLPDGILPSL
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