| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4441 |
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| Symbol | |
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| ID | 5611470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5427494 |
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| End bp | 5428120 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935411 |
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| Product | lysine exporter protein (LysE/YggA) |
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| Protein accession | YP_001476171 |
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| Protein GI | 157377571 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1280] Putative threonine efflux protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.568773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTTTCG ATACCTGGCT ACTCTACTTT TTCGCGGTAC TCCTCATTGC CATCGCTCCC
GGCACCATGG CGGTACTGTC GATGAGTCAT GGGATTCACT ATGGCAAGAG TCGCAGTTTA
GCCACGGCAT TAGGCAGTGT CACCTCAGCT CTTATCTTAA TGGCGGCATC CGCCGCGGGA
CTCGGTGCCC TGCTAAGCGC AACCGAGTAT GGCTTTACGA TTTTAAAATA CTGTGGTGCA
GCCTATCTGA TATTTCTGGG AATAAAGCTC TTGCTCACCA AGGCAAGCGC GAAAGGCTTG
GATCTTCAAC ATATCAAGGG GAAAGGCAGT CCTAAACAGA TGTTCAAGCA GGCCTTCTTA
GTCGGAATAA GTAACCCAAA GGATCTACTG TTTTTTGGTG CCCTGTTCCC GCAGTTTATC
GATATCACTG CCCCCCAAGG GCCACAGCTG GCGACGCTTG CGATCACCTG GGCGATAGTC
GATTTCAGTT TCGTGATGCT CTATGCCAGC ATGGCCAATG TACTGGCCCC GACACTCAAG
ACCAGTAATA AACTGCATTG GTTTGACCGA ACCAGCGGTG GCGTTTTTAT CACGCTAGCG
GCAATTCTGG TAACGAGAGA AGGGTAA
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| Protein sequence | MTFDTWLLYF FAVLLIAIAP GTMAVLSMSH GIHYGKSRSL ATALGSVTSA LILMAASAAG
LGALLSATEY GFTILKYCGA AYLIFLGIKL LLTKASAKGL DLQHIKGKGS PKQMFKQAFL
VGISNPKDLL FFGALFPQFI DITAPQGPQL ATLAITWAIV DFSFVMLYAS MANVLAPTLK
TSNKLHWFDR TSGGVFITLA AILVTREG
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