Gene Ssed_4409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4409 
Symbol 
ID5610782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5388391 
End bp5389674 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content45% 
IMG OID640935379 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001476139 
Protein GI157377539 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.143276 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGAC TGTTTCTATT ATCTTATGGA ATCATCTTAA TCACCTTTTT TATCGCCATG 
ATAGCGATGG ATCAGTTTGA GCTTTTTTCT ACCGATGAGA TTGAAGAAAT TTCATTCGGC
AATGACATCT CGGCAACCGC AGGTCTACTG ACAAAGATAG CCGAACTCAA AGGCCAAGCC
CAAGCCGAGC ATTCATTTAA AAAGTTCACG GAGAAGATGC ACTTAACCCT GGATACATAT
GAAACAACAA GTTCTGAAAT CAGTGCAGTG ATAAGATCTC ACCTCTTAGA GAGGAATTTT
TTTATCGAAG ATGCCGAGGA GAATATTGCC TACTTCACCT TTGGCGATAA GCAGAAAATC
TATCGTATAG CTTCTGATAT GAGCTCTCCT TTTATGCAGC AGATAAGTGA TAAGGAGTGG
CTTACACTAA TTGAGATCTG TACGGCACTC GCTATCATCA CTTTTATCGT GCTCTTCTTT
CTCGCCAGAA GGTTACGTCG GTTGGAGAAA ACCTATATCG CCTTCGCCGA TGGTGACTTT
ACCGCCAGGG CATCGACTAA GATGTTCCAT AACGTGGGTA AACTAAATCA AACTTTCAAT
ATTATGGCCG ACCGAATTTC ACAACTTATC AGTAGTAACC GAAACCTGAC TAACGCGGTT
GCACACGAGT TCAGAACCCC CATTTTCCGC ATTCAATGTA ATCTGGATAT GCTCGATGAT
TCAAAGGTGC GCCCAGACCA AATGCCTCAT CTGGAAGGGA TCCAATCGGA TCTGAATGAA
CTCAACAGCA TGGTCGAAGA GCTACTGCAC TTCTCTAAAC TGGAACGCCT GGATACCAGC
TTAGCACTGG AACCGACCGA CATAGGGAAC CTGCTTGAGA AGCAGCTTAA CCACCTTCAA
TTTGAAACCG AGGCTAAGCT CACACTAGAT GTCAGAGATA ACTGCATCGC CCCGGTATCG
GTGAGAGCAC TGCAGCGCGC ACTGGGGAAT GTCATCCGTA ATGGCTATAA ATATGCGAAC
TCTGAGGTGA GAATATCACT GCAGGCAAGC CCGGAAGAAC TTCACATTAC GATTGAAAAT
GACGGCCCGA ATATTCCCGT TAAAGACAGA GTAACCATTT TTGATCCCTT CGTACGCCTG
GACAGGTCGA GAGACAGGCA AAGCGGCGGA CATGGACTGG GTTTAGCGAT CACTAAGCAG
ATAATAAAGC AGCACAAGGG CCGCATCTAT ATCTCTGACA GCAATATGGG CGGAGCCTGT
TTTAATATCA AGCTACCATT ATGA
 
Protein sequence
MKRLFLLSYG IILITFFIAM IAMDQFELFS TDEIEEISFG NDISATAGLL TKIAELKGQA 
QAEHSFKKFT EKMHLTLDTY ETTSSEISAV IRSHLLERNF FIEDAEENIA YFTFGDKQKI
YRIASDMSSP FMQQISDKEW LTLIEICTAL AIITFIVLFF LARRLRRLEK TYIAFADGDF
TARASTKMFH NVGKLNQTFN IMADRISQLI SSNRNLTNAV AHEFRTPIFR IQCNLDMLDD
SKVRPDQMPH LEGIQSDLNE LNSMVEELLH FSKLERLDTS LALEPTDIGN LLEKQLNHLQ
FETEAKLTLD VRDNCIAPVS VRALQRALGN VIRNGYKYAN SEVRISLQAS PEELHITIEN
DGPNIPVKDR VTIFDPFVRL DRSRDRQSGG HGLGLAITKQ IIKQHKGRIY ISDSNMGGAC
FNIKLPL