| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4408 |
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| Symbol | |
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| ID | 5610781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5387628 |
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| End bp | 5388356 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935378 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001476138 |
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| Protein GI | 157377538 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0763742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCAAAGA TATCGCAGCA GCCCCCGGAA GAGATGAACA ATATAACCGC CGTACTCGTT
GAAGATGATG AGAAGATCAG TGAACTGCTT TCATGTTATC TGGAGAGACA AAATATTCGG
GTCACTTGCG TCAATGATGG TGCCGATGCC GTCGCCACCA TCATTGATAA ACAGCCTGAT
ATTGTGATCC TCGACCTTAT GCTGCCGAAT GTGGATGGAT TTACTATTTG TCGTCAAATC
CAACCTCAAT ACAGTGGCAA GCTGCTCTTT CTAACCGCCA GTGAAGACGA TATGGATCAG
GTCGCCGCAC TCGAAATGGG CGCCGATGAC TTTGTCGTCA AGCCAGTGCA ACCCAGGGTA
CTTCTCGCCA GACTACGCAT GCTACTCAGG CGTCATGCCG ATAGTCCGAA GCCAATATCT
AAAGAGCTCA CATTTGGTGA GCTCTATCTG GATAATCAGC GTAAACAGTG TCGCCTGGCA
AAGCTCGATG CCAAGCTCAC CAGCAGTGAG TTCGATCTGT TGTGGTTACT CGCGACCCAT
GCCGACGAGG TGTTATCCCG TGACTTCTTA GTCAAGACGA TTCGTGGTAT CGAATACGAT
GGCATAGATC GCACCATAGA CAACAAGATA GTGGTATTAC GCAAGAAACT CGGCGATAAC
CCCGCCCTTC CCAGGAAAAT CATCACTGTA CGGGCTAAGG GCTATCTGTT TGTACCGGAC
CGTTGGTAA
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| Protein sequence | MPKISQQPPE EMNNITAVLV EDDEKISELL SCYLERQNIR VTCVNDGADA VATIIDKQPD
IVILDLMLPN VDGFTICRQI QPQYSGKLLF LTASEDDMDQ VAALEMGADD FVVKPVQPRV
LLARLRMLLR RHADSPKPIS KELTFGELYL DNQRKQCRLA KLDAKLTSSE FDLLWLLATH
ADEVLSRDFL VKTIRGIEYD GIDRTIDNKI VVLRKKLGDN PALPRKIITV RAKGYLFVPD
RW
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