| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4403 |
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| Symbol | |
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| ID | 5609711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5381835 |
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| End bp | 5383484 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935373 |
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| Product | electron-transferring-flavoprotein dehydrogenase |
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| Protein accession | YP_001476133 |
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| Protein GI | 157377533 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0644] Dehydrogenases (flavoproteins)
[COG2440] Ferredoxin-like protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00273823 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACGCG AATCGATGGA GTTCGATGTC GTCATCGTTG GAGCCGGCCC CGCCGGACTG
GCTACAGCGT GTCGACTAAT GCAGGTATCG AAAGACAGTG GCCAGGAAAT TACTGTCTGT
GTTGTAGAGA AAGGCTCAGA GGTTGGAGCT CATATTCTTT CAGGCGCGGT ATTTGAGCCC
AAAGTGCTGA GTGAGCTATT CCCCGACTGG CATGAAAAAG GCGCACCACT TCACACAGCC
GTCAAATCTG ATGAGATCCA TATGTTAGGC TCGGCGACCG CTTCACGCGC CATGCCTCAC
TCTCTTCTGC CAAAAACGAT GCATAATGAA GGTAACTACA TTATTAGCGT AGGCAACCTG
GCACGCTGGC TCGCCGAACG CGCCGAAGAG CTTGGCGTCG AAATATTTCC GGGCTTTCCG
GCAAGTGAAC TGCTCTTTAA TGAAGATGGC AGTGTAAAAG GTATCTTGAT AGGCGATATG
GGCATCGGTG CCGATGGAGA GCCTAAAGAT AGCTTTGAGC CAGGTATGGA GCTTCACGCA
AAATATACTG TCTTCAGTGA AGGTTGCCGC GGCCATTTAG GCAAGCTACT CATCGAGAAG
TATCACTTAG ATAATGGCAA GACGCCACAG CACTACGGCT TAGGCTTTAA AGAGATCTGG
AAAGTTCCCA GCGAACAACA TGAGCAAGGC AAGGTGGTTC ATACCGGCGG CTGGCCGTTA
ACCGAAGGCG CGTCCGGTGG TGGTTACCTC TATCACCTCG AAGATAATCA AATCGCAGTG
GGTCTTATTG TCGATCTGAA TTACCAAAAC CCACACCTGA GTCCATTCGA TGAGTTCCAG
CGTTATAAGA CTCACCCGGT CATCTCGAAA TACCTGACCG GCGGCGAGCG CTTAAGCTAT
GGTGCACGTG CCATCACTAA AGGTGGCTTA AACTCCCTAC CTAAGATGAG CTTCCCTGGA
GGACTTATTA TTGGTTGTAA TGCCGGTACC TTAAACTTTG CTAAGGTCAA AGGTACTCAT
ACAGCAATGA AAAGCGGCAT GTTGGCGGCT GAAACAATCG CACAGGCGCT TCTGGCTGGG
GTAGAGGGTG GTAAAGATCT CGACTGTTTC AATGACAGGT TCACAGAGAG CTGGTTACAG
GATGAGTTAT ATAAGTCACG TAACTTCGGC CCGGCAATGC ATAAATTTGG TACCTACCTC
GGTGGCGCCT TCAACTATAT TGACCAAAAC TGGTTTGGTG GCAAGTTCCC TATCACCTTA
AGGGATGAGA AACCCGATCA TACTCAAATG GCAGACATAA ACAGCTATAG TAAGATCGAT
TACCCCAAAC CTGACGGAAA GCTGAGTTTC GATAAGCTCT CTTCGGTTTA CCTGTCAAAT
ACCTTCCACG AAGAAGATCA GCTATGTCAT CTTCGACTCA AGGATGCACG CATTCCTATC
GACGTGAACT TAGTTAAGTT TGATGAACCC GCTCAGCGCT ATTGTCCTGC CGGGGTTTAT
GAAGTTATTG AAGAGGAAGG TGAAAGCAAG TTCGTGATCA ATGCTCAAAA CTGCATTCAC
TGTAAAACCT GCGATATCAA AGATCCCAGC CAAAATATCA CCTGGGTCAC CCCTGAAGGT
GGCGGTGGAC CAAACTACCC GAATATGTAG
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| Protein sequence | MERESMEFDV VIVGAGPAGL ATACRLMQVS KDSGQEITVC VVEKGSEVGA HILSGAVFEP
KVLSELFPDW HEKGAPLHTA VKSDEIHMLG SATASRAMPH SLLPKTMHNE GNYIISVGNL
ARWLAERAEE LGVEIFPGFP ASELLFNEDG SVKGILIGDM GIGADGEPKD SFEPGMELHA
KYTVFSEGCR GHLGKLLIEK YHLDNGKTPQ HYGLGFKEIW KVPSEQHEQG KVVHTGGWPL
TEGASGGGYL YHLEDNQIAV GLIVDLNYQN PHLSPFDEFQ RYKTHPVISK YLTGGERLSY
GARAITKGGL NSLPKMSFPG GLIIGCNAGT LNFAKVKGTH TAMKSGMLAA ETIAQALLAG
VEGGKDLDCF NDRFTESWLQ DELYKSRNFG PAMHKFGTYL GGAFNYIDQN WFGGKFPITL
RDEKPDHTQM ADINSYSKID YPKPDGKLSF DKLSSVYLSN TFHEEDQLCH LRLKDARIPI
DVNLVKFDEP AQRYCPAGVY EVIEEEGESK FVINAQNCIH CKTCDIKDPS QNITWVTPEG
GGGPNYPNM
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