| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4397 |
|---|
| Symbol | |
|---|
| ID | 5610050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5377647 |
|---|
| End bp | 5378462 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640935367 |
|---|
| Product | molybdenum ABC transporter, periplasmic molybdate-binding protein |
|---|
| Protein accession | YP_001476127 |
|---|
| Protein GI | 157377527 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0725] ABC-type molybdate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01256] molybdenum ABC transporter, periplasmic molybdate-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0229924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000281048 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAGT TGAAAGGGCT GGTTGCGCTT TGTGTTGCAA GTTTACTCTT GTGTTCGGGT
ATTGTGAGTG TGCAAGCTGC GGATCGTGAT GTCCCTGCGA TTGCGGCGGC ATCTAATATT
AAGTTTGCTC TCGATGAAAT TGCCAAACAG TTCACCAAAG ATACCGGTGA AAAAGTAAGG
ATCTCTTACG GTTCTTCCGG TAATTTTGTG GCTCAGATTA AACATGGCGC TCCCTTTCAG
ATGTTTATGT CGGCCGATGA AAAATATACC GATCAGTTAG CCCTGTCTGG GGCGACAGTC
GATGAAGGTG TGCTTTATGC GATTGGACGA TTAGCCCTTG CGGCACCGAA AAGTTCTCCG
TTGAAGTTAG ACCCGGAGCT CAGTGGCCTT AAGTCTCTGT TGAAAGCCGG TCAGCTGCAA
CGATTTGCCA TCGCTAATCC GGACCATGCC CCATATGGTG AGCGTGCGCG CGAGTTGCTG
CAGAATATGG GTCTTTGGGA ATCTATTGAG CCTCAGCTTA TCTATGGTGA GAATGTCTCG
CAAGCGGCTC AGTTTGCCGT CAGTGGCTCG ACCCAAGGTG GTATTATTGC GCTCTCTTTA
GCAATAGCCC CTCAATTTCA AAAGATGGGT CACTACCAGG CACTACCAGC CGAACTGCAT
GCTCCCTTAT ATCAACGTAT GGTGCTCACT AAAAAAGCGG GTACAACGGC TAAGGCATTC
TACGCCTACC TTCAAACTGA GACTGCTCGT CAGATATTTA TCGAGTTTGG GTTTGGTTTG
CCTGACTCGT CGACCCATAC TGAGTCGGGT AATTAA
|
|---|
| Protein sequence | MRKLKGLVAL CVASLLLCSG IVSVQAADRD VPAIAAASNI KFALDEIAKQ FTKDTGEKVR
ISYGSSGNFV AQIKHGAPFQ MFMSADEKYT DQLALSGATV DEGVLYAIGR LALAAPKSSP
LKLDPELSGL KSLLKAGQLQ RFAIANPDHA PYGERARELL QNMGLWESIE PQLIYGENVS
QAAQFAVSGS TQGGIIALSL AIAPQFQKMG HYQALPAELH APLYQRMVLT KKAGTTAKAF
YAYLQTETAR QIFIEFGFGL PDSSTHTESG N
|
|---|
| |