| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4391 |
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| Symbol | |
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| ID | 5611350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5372695 |
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| End bp | 5373918 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935361 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001476121 |
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| Protein GI | 157377521 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.61651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000664271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTACCGGC AATTGATGAA CGAGCAGGAG CTGCAGACAG ATCAACATCT CGCGGCTGAA
AAAGCCCGCT ACCAACAGAT GGCACTGACC TTAGATCGAA GAAGCTTCGG TATACAGGTC
AAGACAGCCG ATCCTAAAAC GGCTCTTGTC GTATGGCGTA ACTCTTTCGA TTTGGTTGGC
GCACTGAGTT TGATGCCCGA TGATATGCCT ATGCTGCCGC AAACCCGTGA GTTCCCGATA
TTGACCGGTG GTCCGGATAA GCTACATATT CTCACCGGTG GCTTAGTCAT GACCCGCTAT
GGCCCGGTTT TAATCGCTAC ACGAACCGAT CAGCTCGCAA CCTTGATAGA CAGATTCGTT
AACGCTGCCA TCACGGCTCT GATGTTAACC ATAGTGCTGA CTCTGGCCTT AGGTTATCTG
TTTTCTAAGG CGATCTTACG CCGTCTGGTG CAATATAACC GTCTTAGCCG TCGCATCGAG
CGGGGTGAGT ATTCGACACG TTTTCCTGTC AGTTGGCGCC AGGATGAATT TGACATGCTG
GCCAGCAAGT TTAACCGGGT GCTGGACACG CTGGAAAACA ACTTGGCGGC AGTGAGAGGG
GCGACAGACA ACATTGCCCA CGATCTCAGA ACGCCTCTGT CACACTTAAG GATAGGTTTA
GAGCAGCTGC CTGACAGGTC CTGTGAAGAG TTGCCCGAAG CCTGTGCCAT ATTGACCGAG
AAGTTAGATC ATTGCCTGGC GACGTTCGAT GCCATGCTCT CACTGACCCG TATCGAAGAG
GGGCAGCAGA CATTAGAGTT ACAGGAGCTG AGTCTAAAGC TTTTATGTGA AGACCTGTTT
GAGATGGCCG AAGCCATGGC TGAGATGAAT CAGCAGACTC TTTCGGTTAC CACGGGAACA
GACGTTAAAT TAACCGGTGA CAAGTACCTC CTGTTCCAGG CTCTGTTTAA TCTGGTCGAT
AACGCGATCA AGTATGCGGG TGAAGGTGCG CATATTGAGA TAGTGCAGCA GGGGAGAGAG
ATACAGATCC GCGACAATGG CCCCGGTATT CCCAACGAAG CGAAAGATAG GGTCTTCGAG
CGTTTGGTCA GGTTAGACCC GAGTCGCCAC AATCAGGGCA CAGGGTTAGG GTTATCGTTA
GTGAAAGCAA TTTTGGCCAG ACATGATGCG CGGGTTAAGT TAATGGATAA CCAGCCCGGG
CTGATAGTGA GTATTACTTT CTAG
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| Protein sequence | MYRQLMNEQE LQTDQHLAAE KARYQQMALT LDRRSFGIQV KTADPKTALV VWRNSFDLVG
ALSLMPDDMP MLPQTREFPI LTGGPDKLHI LTGGLVMTRY GPVLIATRTD QLATLIDRFV
NAAITALMLT IVLTLALGYL FSKAILRRLV QYNRLSRRIE RGEYSTRFPV SWRQDEFDML
ASKFNRVLDT LENNLAAVRG ATDNIAHDLR TPLSHLRIGL EQLPDRSCEE LPEACAILTE
KLDHCLATFD AMLSLTRIEE GQQTLELQEL SLKLLCEDLF EMAEAMAEMN QQTLSVTTGT
DVKLTGDKYL LFQALFNLVD NAIKYAGEGA HIEIVQQGRE IQIRDNGPGI PNEAKDRVFE
RLVRLDPSRH NQGTGLGLSL VKAILARHDA RVKLMDNQPG LIVSITF
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