| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4378 |
|---|
| Symbol | |
|---|
| ID | 5610635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5363294 |
|---|
| End bp | 5364079 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640935348 |
|---|
| Product | molybdopterin biosynthesis protein MoeB |
|---|
| Protein accession | YP_001476108 |
|---|
| Protein GI | 157377508 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0476] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 |
|---|
| TIGRFAM ID | [TIGR02355] molybdopterin synthase sulfurylase MoeB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.101331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCGA CCCAAGATAC CGATGAGATT TTGTCCGATA GTGAGATGCT CAGATACAGT
CGACAGATCT CCATCAAGGC GATGGATTTC GACGGACAGG AGAGGTTAAA ACTCGCCAGA
GTCCTGGTTA TAGGCGCCGG CGGTCTTGGC TGTGCAGCCA CTCAATACCT TGCCGTTGCG
GGTGTTGGGC AGATGACAAT CGTCGACTTC GATACCGTTG AGATCTCTAA TCTTCAGCGT
CAGGTATTAC ATCAGGACAG GAATGTCGGC CAGCCAAAAG TCGAATCGGC AAGAGAGACA
CTAAGCCAGC TCAACCCTCA TATTCAGATC GACACCATCA ACGCGGTGCT CGACGATCCT
GAATTGGATG AGCTAGTCGC TAAACATACT CTGGTGCTGG ACTGCACAGA TAATGTGGCT
GTACGCGAGC AACTCAATAA AAGCTGCTTT ACTCATAAGA TACCTCTGGT GTCCGCCGCC
GCCATCCGCA TGGAAGGGAC GGTCACAGTA TTTGACTATC AAGGTGAACA CCCTTGCTAC
CACTGCTTCA GCAAGTTATT TGGTGAACAA ATGCTCACCT GCGTCGAGTC AGGGATATTG
GCACCGGTCG TCGGCATGAT AGGTTGCTTA CAAGCCACCG AGGCCATTAA GGTCATCTCG
AATATGGGCA AACCACTCAT AGGTCGCATC TTAATGATCG ATGCCATGAC GATGGAGTTT
CGCGAGATGA AGATAGCGAA ACAGGCTAAT TGTTCAGTTT GTGCTAAACA GGAAGCAGAG
AAGTAG
|
|---|
| Protein sequence | MSSTQDTDEI LSDSEMLRYS RQISIKAMDF DGQERLKLAR VLVIGAGGLG CAATQYLAVA
GVGQMTIVDF DTVEISNLQR QVLHQDRNVG QPKVESARET LSQLNPHIQI DTINAVLDDP
ELDELVAKHT LVLDCTDNVA VREQLNKSCF THKIPLVSAA AIRMEGTVTV FDYQGEHPCY
HCFSKLFGEQ MLTCVESGIL APVVGMIGCL QATEAIKVIS NMGKPLIGRI LMIDAMTMEF
REMKIAKQAN CSVCAKQEAE K
|
|---|
| |