| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4373 |
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| Symbol | |
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| ID | 5610469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5353222 |
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| End bp | 5356452 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935343 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001476103 |
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| Protein GI | 157377503 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCAG TAATGAATTG GCTTAGCTTG AAACAAAAGT TAATTTTGTT TGCTTCAATT
CCAATGCTGT TACTCACACT ATTTGGCTCT ATGGGAATGC TGCACCTTTC AGACAGCTAT
CAATCCGCTC AAAAAAACTC TCTGGCTATT GAGATAACTC AAGAAGTTGA AAACCTGATT
TTCGAACTAC AAAAAGAGCG CGGTCTCTCC GCAGGCTATA TAGGTAGTGC TGGTGATAAA
TACCGGAAAA GACTTACAAC CCAAAGGGTC GATACCGATA AGCACCTGTC TCAACTGCTG
ACAGGTCAAG CTATTCAGCA GCTATACCGG GCGCTAAAAG GCAATCAAAA CCAGATTGCC
CCCCTACGGG ACAGCTTGAA TCAAATAAAA ACCATGAGTC ATGAGATTAT CTTAGTCCGT
GAAGATGTCA CTAGGAAGCT GGAAAAGGAA TCGTTTCACT TCTACTCAGA GTTCAATCAT
CAGCTATTAA TCTTTATCTC CCAATTACAG CAACAGACCG AAGATGTCCC GCAGGCAAGA
GCCTATAACG ATCTGATCAA TGTCCTCATG ATCCAGGAGT TGGCGGGAAA AGAGCGTGGG
CTCATGAATC GGCTGCTATC GGCAAATCTT ATGGAAGCCG GCGCCTATAT CGGCATAAAT
ACGATAGAGC ACGAATTAGA TCACGCAGTC TCTCAGCTAT TATCGACAGC CACCGATGAA
AACAAAAATT TAATCAAGGA CCTATTAACG AGTAAATCTA ATCTCGACTA TCTTCTTATG
CGCCAGCATG TCAAGACTCA GATAGAGCTT GTCGAACAGG CACAAGAGAT GAGTGTATCT
ATGGGTTATG GTGGATTGAT TCATGACTTC AAGAACTATC TCCTCAGAGG AGACCAAGAG
TATCTCGATA GCTTCAATAA TAATCTAAAG CAGATAAACC TTCAGCTAGC CAGGTTCAGA
CAGCACTCAG ATCTTAGCGA TAAACAGCTT AGTGCGATAA AGCAGATTGC AGAGACCATT
AATAACTACG ACATCCATAT CGACCAGCTG CGGATACTCA AACAGCAAAA GCTCACGATA
GAGGAGCAAG ATAACCGGAT ACGTATAGAC GACGAACCTA TGCTCAACGC ATTATCACTC
CTTCAGTATC AAGCCCCCAG CGTCGACAGC GAGGTTTGGT GGGAAATTGC CAGCGAGCGA
ATCAATCATC TGCACCGGGT CAGCTCGGTG ATCACAGACG AGGTAGCCAA ACTCAGTTCC
CAACAAAAAA ATCAATCTAT CATCTATCTC GTGACAGGGA TCCTGACCGC TCTGCTCACC
ATTCTACTGC TTTTCCTTCT GGGGCGTAGC ATGGTGAGAA ACCTGGTCGG TAGTATTGCA
AGTATCGCCA ACGATATGCA GAAGATGGCA CACGACCCTC ATCTGGAGCT TACTGTGCCG
GTCATAGGTA ATGATGAAAT TGCCCGGATG TCTCTGGCAC TTAACCTTAT GCTTAAGGAG
CGCCTCAAGG CTAACCGTCA GCTCAGCCTG GCTGCAGCCG TATTCGATTA CTCTGCCGAA
GGGATCATGG TTACCGACCA AGATAACCAT ATCGAGCTGA TTAATCCCGC ATTTACTCAG
ATAACCGGTT ACAGTCTGGA AGATGTAAAA GGCAGAAACC CATCCGTATT AAACTCCAAC
CAACAACCAC ATCATTTCTA TGACTCCATG TGGAAGTCGC TGAAAGAGTT GGATAAATGG
GAAGGTGAGA TCTGGAATAA ACGTAAAGAT GGTCAAGTCT ACCCGGAATA TCTGGCCATC
ACAGTCGTCA GAGATGAAGC GGGAGAGATC ACCCATCATA TCGGTCTTTT CCTCGATATC
AGTAATCGTA AAAAATATGA ACAAGATATC TGGTATAAGA CAAACTATGA TCCACTCACG
AATCTGGCCA ACCGCCACCA ATACTCGTTG AAGATACAAC AAGAGATGTC CGTTGCAAAA
CAGCAGTCTC AACAACTTGC TATTCTTTTT ATTGATCTCG ATCGCTTTAA GTATACCAAT
GACATCTATG GCCATGCGGT TGGCAATGAA CTCCTATGTC TGGTCGCCGC CAGATTAGAG
TCGCTCTTAG GTAAACATGA TTTTGTCGCT CGCCTCAGTG GTGATGAATT TGTCATTATT
CTCTCCAATG TGAAACGCAG GAATGAGGTA CGTCAGTTTG TCGAAAATGT CATTGACCAC
CTATCTTCAC CGTTTGGACT CAGTAATAAT GAGTTGATGA TCTCTGCCAG CATAGGTGTA
AGCCTATTTC CTGAAAATGG AGCTGACGGC GAACTGCTGA CTCGCAATGC CGAAACGGCG
ATGTATCAGG CAAAAGGCGA TGGCCGTAAC AGTTACCGCT ACTTCTCTGC AAACATGAAC
AGTAATATGT TGGAGCGAGT GCAACTGGAA CAACGCCTCA GACGCGCCGT ACTACAGGAA
GAGTTCTGTC TGTTCTATCA GCCCATAGTC AATATGGACG GTCGAACTGT CATAGGCGTC
GAGGCACTTA TTCGCTGGCG CGACCCTAAG TATGGACTCA TTTCACCGGA TAAGTTTATT
CCAGTTGCAG AAGAAACCGG GCTCATCGAA CCCATAGGCG AATGGGTATT GCAGCAAGCC
CTCACAGATC TAAGCCACTG GCATGCTAAT GGCTTTATGA TCAACATGGC GATTAATGTC
TCAGGCAGAC AGCTTATCAA CTCCAATCAG GTCTCGTTTG ATTCTCTGCT GGACAGTATG
CTGCAAAAGC ACAAGATAGC ACCTCGATAC CTGCACATTG AGATCACCGA GTCCATGCTG
ATGGATGATA CCGAGCAGTG TCAGCAAAAA CTGGAGGCTA TTCGTGATCT CGGTATCGAT
ATCTATATTG ACGACTTCGG TACCGGATAC TCCTCACTGA GTTACCTCAA ACGTTTTCCT
ATCTCGGTAA TTAAGATCGA TAAGAGCTTT GTCGATAATA TGCTGGAGCG ACAATCGGAT
GCCAACCTGA TCAAGGCGAT TGTGATGATG GGGCAGAGCT TAGAGTTGAA ACTCGTTGCC
GAAGGCATAG AAACCGAGGA GCAGTGGGAA TTCTTGCAAA ACTTAGGTTG TAATTTTGGA
CAGGGTTACC TGATCTCCAG ACCACGCCCC ATCGATGAGC TGACCGAGTT ATTGGCTGAT
AACCTGAAAT CGGGGCAAGA AGTTGAGCTG CAAAGGTGCT CGGCGCTCTA G
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| Protein sequence | MSSVMNWLSL KQKLILFASI PMLLLTLFGS MGMLHLSDSY QSAQKNSLAI EITQEVENLI
FELQKERGLS AGYIGSAGDK YRKRLTTQRV DTDKHLSQLL TGQAIQQLYR ALKGNQNQIA
PLRDSLNQIK TMSHEIILVR EDVTRKLEKE SFHFYSEFNH QLLIFISQLQ QQTEDVPQAR
AYNDLINVLM IQELAGKERG LMNRLLSANL MEAGAYIGIN TIEHELDHAV SQLLSTATDE
NKNLIKDLLT SKSNLDYLLM RQHVKTQIEL VEQAQEMSVS MGYGGLIHDF KNYLLRGDQE
YLDSFNNNLK QINLQLARFR QHSDLSDKQL SAIKQIAETI NNYDIHIDQL RILKQQKLTI
EEQDNRIRID DEPMLNALSL LQYQAPSVDS EVWWEIASER INHLHRVSSV ITDEVAKLSS
QQKNQSIIYL VTGILTALLT ILLLFLLGRS MVRNLVGSIA SIANDMQKMA HDPHLELTVP
VIGNDEIARM SLALNLMLKE RLKANRQLSL AAAVFDYSAE GIMVTDQDNH IELINPAFTQ
ITGYSLEDVK GRNPSVLNSN QQPHHFYDSM WKSLKELDKW EGEIWNKRKD GQVYPEYLAI
TVVRDEAGEI THHIGLFLDI SNRKKYEQDI WYKTNYDPLT NLANRHQYSL KIQQEMSVAK
QQSQQLAILF IDLDRFKYTN DIYGHAVGNE LLCLVAARLE SLLGKHDFVA RLSGDEFVII
LSNVKRRNEV RQFVENVIDH LSSPFGLSNN ELMISASIGV SLFPENGADG ELLTRNAETA
MYQAKGDGRN SYRYFSANMN SNMLERVQLE QRLRRAVLQE EFCLFYQPIV NMDGRTVIGV
EALIRWRDPK YGLISPDKFI PVAEETGLIE PIGEWVLQQA LTDLSHWHAN GFMINMAINV
SGRQLINSNQ VSFDSLLDSM LQKHKIAPRY LHIEITESML MDDTEQCQQK LEAIRDLGID
IYIDDFGTGY SSLSYLKRFP ISVIKIDKSF VDNMLERQSD ANLIKAIVMM GQSLELKLVA
EGIETEEQWE FLQNLGCNFG QGYLISRPRP IDELTELLAD NLKSGQEVEL QRCSAL
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