| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4372 |
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| Symbol | ribB |
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| ID | 5610468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5352238 |
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| End bp | 5352891 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935342 |
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| Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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| Protein accession | YP_001476102 |
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| Protein GI | 157377502 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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| TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCAGT CATTACTCTC CCCCTTCGGC ACCGCTATCG AACGTGTCGA AACAGCGCTA
ATCTCTCTCA AGCAAGGTCG CGGCGTTCTC GTTGTCGATG ATGAAGACAG AGAAAATGAA
GGCGATCTCA TCTATTCAGC CGAAACACTA ACCAATGAAC AGATGGCACT GCTTATTCGT
GAAGGTAGCG GCATAGTATG CCTCTGCCTT CCCGATGAAA GGGTTAAACA TTTAGCCCTT
CCTCCAATGG TTGAAAATAA CTCTAGCCAG TATGGCACCG CCTTTACGGT TAGCATTGAG
GCAAAAGAGG GAGTCACTAC AGGCGTTTCT GCCGCCGATC GTGTGACCAC AATCAAAACC
GCAATTGCTG ACGATGCTCA ACCCGACGAC TTAGCTCGTC CCGGACATGT CTACCCACTT
CGTGCTCAAC CCGGTGGCGT AATGACTCGC AGAGGTCACA CGGAAGGGAC TATCGACTTG
ATGATACTCG CAGGGTTGAA GCCAGCCGGC GTACTTTGTG AAATTACCAA CCCTGATGGC
ACCATGGCCA GACTGGCTGA GATCATCAGT TTCGGAGCGA AACATGATCT TCCCGTTCTG
ACCATCGAGG ATATAGTCGA ATACCGTAAG TCTCTGATGG CCGAAGCCAG TTAG
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| Protein sequence | MNQSLLSPFG TAIERVETAL ISLKQGRGVL VVDDEDRENE GDLIYSAETL TNEQMALLIR
EGSGIVCLCL PDERVKHLAL PPMVENNSSQ YGTAFTVSIE AKEGVTTGVS AADRVTTIKT
AIADDAQPDD LARPGHVYPL RAQPGGVMTR RGHTEGTIDL MILAGLKPAG VLCEITNPDG
TMARLAEIIS FGAKHDLPVL TIEDIVEYRK SLMAEAS
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