| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4368 |
|---|
| Symbol | |
|---|
| ID | 5610727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5346427 |
|---|
| End bp | 5347221 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640935338 |
|---|
| Product | methyltransferase type 12 |
|---|
| Protein accession | YP_001476098 |
|---|
| Protein GI | 157377498 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTACT TAGCCGTAAA TAAAGCCGCT TGGGATAAGC GTACAAAAAT TCATGTAGGT
TCGAAGTTTT ATGATATTGA AGGCTTTCTG AAAGGCAAGA GTTCGCTACA AGAGATAGAG
CTGTGTGGGT TGAATGTAAA AGGTAAGAGT CTGCTTCACC TTCAATGCCA TTTTGGCTTA
GATACCTTAT CCTGGGCACG AGAGGGCGCC GATGTTACCG GAATCGATCT CTCATCCGCC
GCGATAGAGC AAGCACAGGA GCTAGCGAAA CAGATTGAGG CCGAGGCTAA GTTTATCTGT
ACCGATCTGT ACAGCACGCC AGAGAGAGTA TCCCGTCAAT TTGATATCGT GTTTACCTCT
TACGGTGCCA TCGCCTGGCT GCCAGATCTG GATCGGTGGG CAAAGGTTGT GAGTGACTGT
TTAAAGGCGG GTGGACAGTT CTATATGGTA GAGTTTCATC CTTTAGAAGC ACTGTTCGAT
GGCTACAGTT ATTTTGCTAA GCAAGAGCCG GATGTAGATG AAGAGGGGAC CTACACAGAG
AACTGTGATG GCGAGATAAA TACTGTGATG AGCTGGCCAC ATCCCATCTC AGAGGTGTTA
AATGCTCTGA TTAACGCCGG GCTGGAGCTA AAGGGTTATA ACGAATTTGA TTTCAGCCCC
TATGATGCAT TTGCCGGCCT GCAGGAGGAG AGTATCACCA ATTCCGCTGG AGAGCTGAGC
ACAAGGTATT TTCTTGAACA TAAGCAGCAG CGTGTGCCAC TGACCTATTC GGTGAGTGCG
ATTAAACCTG GTTGA
|
|---|
| Protein sequence | MDYLAVNKAA WDKRTKIHVG SKFYDIEGFL KGKSSLQEIE LCGLNVKGKS LLHLQCHFGL
DTLSWAREGA DVTGIDLSSA AIEQAQELAK QIEAEAKFIC TDLYSTPERV SRQFDIVFTS
YGAIAWLPDL DRWAKVVSDC LKAGGQFYMV EFHPLEALFD GYSYFAKQEP DVDEEGTYTE
NCDGEINTVM SWPHPISEVL NALINAGLEL KGYNEFDFSP YDAFAGLQEE SITNSAGELS
TRYFLEHKQQ RVPLTYSVSA IKPG
|
|---|
| |