Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4357 |
Symbol | |
ID | 5609715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5332390 |
End bp | 5333964 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640935327 |
Product | general secretory pathway protein E |
Protein accession | YP_001476087 |
Protein GI | 157377487 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.555593 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAGTG AGACTCAAGC CTCTCACAAT GATGAGCTGG CGCAAGTGAC CGATGAGCTT GGGCTGGCAG TCGAAAGTGA AACCGATGAG GTGTTTCACT CCACGAGTAA GGAGCGTTTA CCTTTTGCCT TTGCACATCG CTTCGAAGTG GTACTGGATA GTGTAAATGA GCCGGGTCTT ACCCTGTTTC ATACCGCTTC CACGCCAGTC GAAGCTTTAC TCGAGGCTCG CCGCTATACA GGTAAGGAGC TGCCTCTGGT TCAGCTTGCG CCGGACGAGT TCGAGGCAAG GCTAACACAG GCTTATCAGG CGAACTCTTC AGAGGCTCAG CAGCTGATGG AAGATATCGG CAATGAGATG GATCTGTTTA CCCTGGCCGA GGAGTTGCCG CAGACCGAAG ATCTGCTTGA AGGCGATGAC GATGCGCCGA TCATTAAATT GATCAACGCC CTGTTATCGG AAGCGATTAA GGAAGAGGCG TCCGATATTC ATATCGAGAC CTACGAGAAA CAGCTTGTTG TGCGTTTCCG GGTCGATGGT GTACTCAAAG AGGTGCTCAA GCCGAACCGT AAACTCTCGT CACTCTTGGT TTCACGTATC AAGGTGATGG CACGTCTGGA TATCGCCGAG AAACGTGTGC CTCAAGATGG CCGCATCTCG CTACGTATTG CCGGTCGTGC GGTCGATGTT CGTGTATCGA CGATGCCGTC GAGTCATGGC GAGCGTGTGG TTTTGCGTCT GCTCGATAAA AATGCGGGTA ACTTAGATCT TATCCAACTG GGCATGACCG AAGCGGTACG CATTCAGTTC GATGAACTGA TCCGTAAACC TCACGGTATT ATCCTGGTCA CCGGACCTAC GGGTTCGGGT AAGAGTACGA CCCTCTATGC CGGATTAACC GAACTCAACA CCAAAGATAC CAATATTCTT ACCGTCGAAG ACCCCATCGA GTATGAGCTT GAAGGGATCG GTCAGACTCA GGTGAACACT AAGGTCGATA TGACTTTTGC CAGAGGTCTG CGTGCGATTC TGCGACAAGA TCCCGATGTC GTGATGATTG GTGAGATCCG TGATTTAGAG ACGGCTCAAA TTGCGGTTCA GGCTTCATTG ACGGGCCATA TGGTACTGTC GACCTTGCAT ACCAACACAG CCTCAGGTTC GATTACCCGA TTACAGGATA TGGGTGTCGA ACCTTTCCTC GTCTCATCGA GTTTATTGGG CGTGTTGGCT CAACGATTGA TCCGAACCCT GTGCTCCGAG TGTAAGTCTG AACACGCACC GGCTCTGAGT GAACGTGCGT TACTGGGCAT GAAAGACGAT GATACACGAG TGATCTATCG CGCTCAGGGA TGCAAGGCAT GTGGCCATAA TGGCTATCGT GGACGTACAG GTATTCATGA GTTACTCGTG GTCGATGACG ATGTTCGTGA ACTCATTCAT ACCGGTCGCG GAGAATTGGC GATTGAGAAA CATATTCGAC AATCGACGCC GAGTATTCGT CATGATGGTA TGAGTAAGGT ACTTGCTGGG ATCACAACCC TGGAAGAAGT GTTGCGTGTA ACCCGCGAGG AATAA
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Protein sequence | MMSETQASHN DELAQVTDEL GLAVESETDE VFHSTSKERL PFAFAHRFEV VLDSVNEPGL TLFHTASTPV EALLEARRYT GKELPLVQLA PDEFEARLTQ AYQANSSEAQ QLMEDIGNEM DLFTLAEELP QTEDLLEGDD DAPIIKLINA LLSEAIKEEA SDIHIETYEK QLVVRFRVDG VLKEVLKPNR KLSSLLVSRI KVMARLDIAE KRVPQDGRIS LRIAGRAVDV RVSTMPSSHG ERVVLRLLDK NAGNLDLIQL GMTEAVRIQF DELIRKPHGI ILVTGPTGSG KSTTLYAGLT ELNTKDTNIL TVEDPIEYEL EGIGQTQVNT KVDMTFARGL RAILRQDPDV VMIGEIRDLE TAQIAVQASL TGHMVLSTLH TNTASGSITR LQDMGVEPFL VSSSLLGVLA QRLIRTLCSE CKSEHAPALS ERALLGMKDD DTRVIYRAQG CKACGHNGYR GRTGIHELLV VDDDVRELIH TGRGELAIEK HIRQSTPSIR HDGMSKVLAG ITTLEEVLRV TREE
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