| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4356 |
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| Symbol | |
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| ID | 5609801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5331163 |
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| End bp | 5332386 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935326 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_001476086 |
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| Protein GI | 157377486 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCAT TTGAATACAA GGCGTTAGAT TCAAAAGGTA AGCAACAAAA AGGTGTGATG
GAAGCCGATA CGGCGCGTCA TGCTCGAGGT CAGCTTCGCG AACAACGTTT GATGCCGCTC
GAGATCACCC CGGTTGTTGA AAAAGAATCC AAAGCGAAAT CGACCGGTAA GAGTCTCTTT
CAACGAGGGA TCTCAGTTGC GGAACTCGCG TTAATCACCC GTCAGGTGGC AACCTTGGTT
GCGGCGGGTT TACCCGTCGA AGAGGCATTG AAGGCGGTAG GACAGCAGTG CGAGAAAGAT
CGTTTAGCCA GCATGATTAT GGCGGTCAGA TCCCGTGTCG TCGAAGGTTA TAGCCTGGCA
GATTCCATGG CAGAGTTTCC CCATATTTTC GATGATCTCT ATCGCGCCAT GGTGGCATCG
GGTGAAAAAT CCGGTCACCT CGAAGTCGTG CTTAACCGTC TTGCCGATTA CACCGAGAGA
AGACATCAGT TGAAGAGTAA GATGACGCAG GCGATGATCT ACCCTGTGGT GCTTACTGTC
GTGGCAATCA GTGTTATCGC GATATTGCTA GCCGCTGTTG TACCTGAGGT GGTGGGTCAG
TTTGAGCATA TGGGACAGGA GTTGCCCTGG ACAACCTTGC TGTTGATCGC TTCATCTGAT
TTTGTCAGAG ATTACGGCTT GCTGGTTTTA GGTGTCATTG TCATAGGCTT TGTGCTGTTG
AAGCGGCTCT TAACGAAAGC CGAATATCGA ATGAAGTATG ACAGCTTACT ACTCGTGTTT
CCGGTCATAG GCCGTGTCAG CAAAGGGCTT AATACTGCCA GATTTGCACG AACCTTAAGT
ATTCTGACCG CCAGTGCGGT GCCACTGCTG GATGCAATGC GTATTGCCAG CGAAGTGCTT
ATTAATGTAA GAGTACGAGC TGCGGTTGAA GATGCTACCG CCAGAGTTCG GGAAGGTACC
AGTTTAGGTG CAGCACTGAC TAATACGAAA CTTTTCCCTC CTATGATGCT CTATATGATC
ACATCGGGTG AAAAGAGTGG TCAACTTGAG CAGATGCTGG AGCGAGCCGC CGATAACCAA
GACCGAGAGT TCGAGTCCAA TGTGAATATT GCGCTGGGTG TATTTGAACC TCTGCTCGTG
GTGAGTATGG CTGCTGTGGT GCTGTTTATC GTGTTGGCTA TTCTGCAACC GATCTTAGAG
CTGAATAATA TGATCAGTGG CTAA
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| Protein sequence | MPAFEYKALD SKGKQQKGVM EADTARHARG QLREQRLMPL EITPVVEKES KAKSTGKSLF
QRGISVAELA LITRQVATLV AAGLPVEEAL KAVGQQCEKD RLASMIMAVR SRVVEGYSLA
DSMAEFPHIF DDLYRAMVAS GEKSGHLEVV LNRLADYTER RHQLKSKMTQ AMIYPVVLTV
VAISVIAILL AAVVPEVVGQ FEHMGQELPW TTLLLIASSD FVRDYGLLVL GVIVIGFVLL
KRLLTKAEYR MKYDSLLLVF PVIGRVSKGL NTARFARTLS ILTASAVPLL DAMRIASEVL
INVRVRAAVE DATARVREGT SLGAALTNTK LFPPMMLYMI TSGEKSGQLE QMLERAADNQ
DREFESNVNI ALGVFEPLLV VSMAAVVLFI VLAILQPILE LNNMISG
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