| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4354 |
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| Symbol | |
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| ID | 5609799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5329979 |
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| End bp | 5330551 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935324 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_001476084 |
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| Protein GI | 157377484 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCGC AAAAAGGTTT TACCTTAATG GAAGTTTTGC TGGTCGTCCT CTTGATGGGG
CTGGCCGCTT CTGCTGTGAC TATGAGTATG AGTGGTGCCG ATAAGCAAAG AGAGTTGGAG
AGATCGGCTT TGCAGTTTAT GGCTGCGACT GAGATGGTGC TCGATGAGAC CGTACTCAGT
GGGCATTTCA TCGGCATAGT GATTGATGAT GAAAGCTATA AATATGTCTT TTACGACGAA
GGTAAATGGA AGCCCCTGGC TCAAGATAGA ATCTTATCCG AAAGGCAGAT GGAGTATGGC
GTTAAGCTGG ACCTTATTCT GGATGGCTTA CCTTTGGTTC AAGACGATGA AGAGAAAGAC
ACCTGGTTCG AGGAGCCGCT GATTGAAAAG TCTGAAGAGG ATATGAAGAA GTTTCCTGAG
CCTCAGGTGT TGCTTTTCCC CAGCGGAGAG ATGAGTACCT TCGAGCTTAT TTTCTCGAGC
AAAGATGAAT CCGGCAGAGA GATCGAGGCC CTGGTTGTGG GCGATTCCCT TGGTCGATTA
ACTTTGGGGA GAGACGATGG ATTCGATGAC TAA
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| Protein sequence | MKSQKGFTLM EVLLVVLLMG LAASAVTMSM SGADKQRELE RSALQFMAAT EMVLDETVLS
GHFIGIVIDD ESYKYVFYDE GKWKPLAQDR ILSERQMEYG VKLDLILDGL PLVQDDEEKD
TWFEEPLIEK SEEDMKKFPE PQVLLFPSGE MSTFELIFSS KDESGREIEA LVVGDSLGRL
TLGRDDGFDD
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