Gene Ssed_4353 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4353 
Symbol 
ID5609798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5329524 
End bp5329895 
Gene Length372 bp 
Protein Length123 aa 
Translation table11 
GC content47% 
IMG OID640935323 
Productgeneral secretion pathway protein I 
Protein accessionYP_001476083 
Protein GI157377483 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2165] Type II secretory pathway, pseudopilin PulG 
TIGRFAM ID[TIGR01707] general secretion pathway protein I
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAATCATA GCGTTAAGGG CATGACCTTA CTCGAAGTTA TCGTTGCTTT AGCCGTATTT 
GCCATTGCTG CGGTGTCGAT CACTAAGAGC CTGGGAGATC AAATTGCCAA CATGCCAATC
TTAGAGGAGC GGACCTATGC GCAATGGGTC GCCGACAATG AGATGGTCGA GGCGAGACTG
GAGCCGAAGT TTCCTGATAT CGGTAAGAAA GAGGGGGAAA CTGAACTGGC TGGTCGAGAT
TGGTATTGGC GTAAAGAGGT GGTAAAAACC ACGGATGATA AATTCAGAAT GATCCGCATC
AGCGTCAGTG ATGATGAGCG ATATCAACGT ATTCTTGCCC AGGTAAGTAG TTATGTACTC
AATCAAGACT AG
 
Protein sequence
MNHSVKGMTL LEVIVALAVF AIAAVSITKS LGDQIANMPI LEERTYAQWV ADNEMVEARL 
EPKFPDIGKK EGETELAGRD WYWRKEVVKT TDDKFRMIRI SVSDDERYQR ILAQVSSYVL
NQD