| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4352 |
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| Symbol | |
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| ID | 5613189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5328791 |
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| End bp | 5329543 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935322 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_001476082 |
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| Protein GI | 157377482 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTACTCAA TCAAGACTAG AGTTATCGCA GGTTTTACCT TGCTTGAGAT GTTAGTCGCC
ATCGCTATTT TTGCCATGTT GGGGCTCGCG GCTAACTCTG TCCTGCACAC GGTGATTCAA
AATGATGCCG CGACAAAAGA GTTTTCCGGC AAGCTGAAGT CGATGCAACA GGGCTTCGGG
GCGCTCGAGC GTGATTTAGG GCAGATGGTG GCACGCACGC CTCGCCTGCT CGAGGGGGGT
CGCGGCACAA CCGTATTTCA AACCGGTGAA GATATTCTGG ATTCAGAATC TGAGGCGCTG
GTTTTCTTTC GTCTGGGCTG GCTAAACCCC GATGGCTTAT TGCCAAGAGG CAGCATTCAA
TCTGTGGCCT ATGTGGTGCA GGATAACAAC CTTGAGCGCT GGTATTATCC CTATCCAGAG
CCAGAGTTCG GCAGTGAGCC GATCAAAACA ATCGTCATTA AAGATGTGAT CTCGGTGGAA
TACTCCTTCT TTATGGAAGA TAAGTGGGAG AGAAAAGTCG ATGCGACTAA GCTGCCGAAG
GCGATTGCGA TGGAAATCGA ATTAGAAGGT TATGGTAAAA TCCAGCGTAA ATTTTTGCTG
TCAACAGGTG CTCCCGTCGG CTCGGGAAGT AATAACAATG GTGGCAACAA TAACGGTGGT
AATAACTCCG GCAATAATAA TGGCAACAAC TCTGGTAATA ATAACGGCAA CAACTCCGGA
AATGGCAGCG GTGATGACAG GGATGAAGGC TAG
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| Protein sequence | MYSIKTRVIA GFTLLEMLVA IAIFAMLGLA ANSVLHTVIQ NDAATKEFSG KLKSMQQGFG
ALERDLGQMV ARTPRLLEGG RGTTVFQTGE DILDSESEAL VFFRLGWLNP DGLLPRGSIQ
SVAYVVQDNN LERWYYPYPE PEFGSEPIKT IVIKDVISVE YSFFMEDKWE RKVDATKLPK
AIAMEIELEG YGKIQRKFLL STGAPVGSGS NNNGGNNNGG NNSGNNNGNN SGNNNGNNSG
NGSGDDRDEG
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