| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4351 |
|---|
| Symbol | |
|---|
| ID | 5613188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5327793 |
|---|
| End bp | 5328791 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640935321 |
|---|
| Product | general secretion pathway protein K |
|---|
| Protein accession | YP_001476081 |
|---|
| Protein GI | 157377481 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3156] Type II secretory pathway, component PulK |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.847648 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTTAAGA AGCTTCCCGG TAAGCAGCGA GGTGTTGCAC TCATCGTTGT ACTATTGATT
GTGGCTATGG TGGCGATAAT CGCGACCAAT ATTAATAGTC GTAATCAGCT TTCGGTCCGG
CGGACATTGA ATTTAACTCA ATACGACCAG GCATTTTGGT ACGCGATTTC GGCCGAAGAG
TTAACCAAGA AAGTATTGAA GCAAGATCTC GATGATGCCG ATGGTACGGT TCACCTGCAG
CAGTATTGGG CACAGGCCGA TGTGGTTTTT CCCGCCGAGC ACGGTGAGAT TGGTGGAACG
ATCAGTGATA TGCGTTCCTG TTTTAACCTC AATGCCTTGT CTATCGAGAG TAAAGAGGTT
GAGAATGGGC AGCCTAAACT TCCCCTGCCT GCGGTGCAGT ATAAAGGGCT GTTGGTTGCA
CTGGGTATGG ATGAGTTTTC GGCGGAGCGG CTGACTCACA CCCTGAAAGA TTATATCGAT
GAAGACAGCA CGGCGAGTCC ATTTGGTGCC GAAGATGCGG ATTATGAATC GAGGAATGTG
CCCTATAGGG CGGCGAACAC TCTGATGAGT CACCGTAGTG AGTTAAGAGC TGTCATGGGG
TATACGCAAG ATATCTATCT TAAATTGTTG CCCTATATTT GTGTCATCCC CGGTGATGAC
CGCCAGCTGC TCAATGTGAA TACCTTGAAG GTCGAGCAGG CTGCCTTAAT GGCCGGCATG
TTTGATAATA AAATTTCCGT AGGCGAGGCC GAGAGTATCA TCAATCAACG ACCCGGCGAT
GGTTTCGAGA AGATAGAGGA CTTTTGGTCA AACTCATCTT TGGCCAGCCT GCAATCGGAA
GCTGACTTGA AAACAACATT TGTCGTCGAC AGTAACTACT TCCTATTAGA GGCTGGGGCC
AAGGTCGATA ACGCTACGTT TCGCTTGGAT AGTGTGCTGA AACGAGGCAG TGACAATAAG
ATGGATATTC TGACACGACA GTATGGCGGT CAGAAATAA
|
|---|
| Protein sequence | MVKKLPGKQR GVALIVVLLI VAMVAIIATN INSRNQLSVR RTLNLTQYDQ AFWYAISAEE
LTKKVLKQDL DDADGTVHLQ QYWAQADVVF PAEHGEIGGT ISDMRSCFNL NALSIESKEV
ENGQPKLPLP AVQYKGLLVA LGMDEFSAER LTHTLKDYID EDSTASPFGA EDADYESRNV
PYRAANTLMS HRSELRAVMG YTQDIYLKLL PYICVIPGDD RQLLNVNTLK VEQAALMAGM
FDNKISVGEA ESIINQRPGD GFEKIEDFWS NSSLASLQSE ADLKTTFVVD SNYFLLEAGA
KVDNATFRLD SVLKRGSDNK MDILTRQYGG QK
|
|---|
| |