| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4346 |
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| Symbol | nudE |
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| ID | 5613141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5323626 |
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| End bp | 5324171 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935316 |
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| Product | ADP-ribose diphosphatase NudE |
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| Protein accession | YP_001476076 |
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| Protein GI | 157377476 |
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| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
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| COG ID | [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.143313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.376431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGGACA AGAAACCGGA AATTTTAGGC GCTGAGATCG TTGCCCAAAG CCGCCTGTTT
AAAATCGAGC AGGTACACCT GAAGTTTTCG AATCAGGTCG AGCGTCAATA TGAAAGGATG
AAGGGTAATA ACCGTGGTGC TGTCATGGTG GTCCCTGTGC TCAACAGTGA GACTCTGCTT
CTTGGCAGAG AGTACGCCGC CGGAACTCAC TCCTATGAAC TCGGTTTTCC TAAGGGGCTA
ATCGATCCCG GAGAGGAGGC GCATGAAGCG GCTAACAGAG AGTTGCAGGA GGAGATTGGG
TATGGTGCCG CTAAGCTTAC ACATCTTATG GAACTCAGCT TAGCTCCCGG ATATTTTGCC
AGTAAGATGC AAATTTTTAT TGCAGAGGAG TTATTCGAAA GCCAACTCGA GGGGGATGAA
CCTGAGCCTA TCGAGCTGAT CCATTGGCCC CTCGACAGAT GGCAGTCTCT TTTGGATCTG
GAAGACTTTT CTGAATCAAG AAGCGTGAGC GCCTTGTTTT TAGCTCAGAA ATATCTAAAA
CTGTAA
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| Protein sequence | MKDKKPEILG AEIVAQSRLF KIEQVHLKFS NQVERQYERM KGNNRGAVMV VPVLNSETLL
LGREYAAGTH SYELGFPKGL IDPGEEAHEA ANRELQEEIG YGAAKLTHLM ELSLAPGYFA
SKMQIFIAEE LFESQLEGDE PEPIELIHWP LDRWQSLLDL EDFSESRSVS ALFLAQKYLK
L
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