| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4342 |
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| Symbol | |
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| ID | 5611721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5319346 |
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| End bp | 5320455 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935312 |
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| Product | tRNA 2-selenouridine synthase |
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| Protein accession | YP_001476072 |
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| Protein GI | 157377472 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2603] Predicted ATPase |
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| TIGRFAM ID | [TIGR03167] tRNA 2-selenouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.266604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00245617 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCAAA ACATAGTTCC CAAGAGTGCC TACAGAGAGA TAATGCTCAG TGGTCATCCT
ATGATGGATG TCAGAGCTCC TATAGAATTT AATAAGGGGG CGTTTCCATC GAGTACTAAT
TTGCCACTCA TGCAAGATAG TGAGCGTCAA AAGGTGGGGA CTTGTTATAA GAATAAAGGT
CAGGATGCGG CAATTGCCCT CGGCCATTCA CTGGTTAATG GTCAAATCAA GCAACAGAGA
GTCGAGGCAT GGCTTGAGTT TATTAGCCTG CATCCCAATG CCTATCTTTA TTGCTTTCGC
GGGGGGCTAA GATCTCAACT GACACAGCAA TGGATAAAAG AGGCCGGGAT AGAGATTCCC
TATGTTGAGG GTGGTTATAA AGCCATGCGT CAATACCTGA TCGAAGTGAT AGATGAGGCG
CCAAAACAGA GTCCCATCCA TATTCTCAGT GGGATAACGG GTAGTGGTAA AACTGACTTT
TTGCTTCAAC GCTCTGAGGC TATCGATCTC GAAGGGCTGG CCCATCATCG TGGTTCAAGT
TTTGGACGAT ATCATGAGCC ACAACCAAGC CAGATTAACT TCGAGAATAA CCTGGCCGTC
TCACTGCTCA AACATCAAGA GAGAGCGGAG AAATGTCTGC TTGTTGAGGA TGAAAGCTTC
CTGATTGGAC GTTCAGCAAT ACCAAAGCAG TTCTACTCGG GTATGCAAGC CGCCGATATG
CTTGTACTTG AGGAGCCAGA GGGAGCCAGG CTAAACAGAC TACTGAACGA ATATGTCCAT
AAGATGCACT CCGGCTATGT GGAGCGCTTA GGTGAAGAAG CCGGATTCGA TGCATTTGCA
GAGTACCTGA GCCAAAGCAT CACAGGAATT AAGAAACGAC TCGGGGGTCA GCTTCATGAT
GAATTTCAAT CCATCATAGC TAATGCACTC AATATACAAC GCCAGCGTGG CGATACTCAG
CCGCATATGG AGTGGATATC GCTTCTCCTC ACAAAATATT ACGATCCTAT GTACCAATAC
CAGCTGGATA AGAAACAATC CAGAGTCATT TTCAAGGGCT CGCATCAAGC CATGCATGAA
TGGTTAGATG AGTATTCGTC AAAGGGATAA
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| Protein sequence | MSQNIVPKSA YREIMLSGHP MMDVRAPIEF NKGAFPSSTN LPLMQDSERQ KVGTCYKNKG
QDAAIALGHS LVNGQIKQQR VEAWLEFISL HPNAYLYCFR GGLRSQLTQQ WIKEAGIEIP
YVEGGYKAMR QYLIEVIDEA PKQSPIHILS GITGSGKTDF LLQRSEAIDL EGLAHHRGSS
FGRYHEPQPS QINFENNLAV SLLKHQERAE KCLLVEDESF LIGRSAIPKQ FYSGMQAADM
LVLEEPEGAR LNRLLNEYVH KMHSGYVERL GEEAGFDAFA EYLSQSITGI KKRLGGQLHD
EFQSIIANAL NIQRQRGDTQ PHMEWISLLL TKYYDPMYQY QLDKKQSRVI FKGSHQAMHE
WLDEYSSKG
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