| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4338 |
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| Symbol | |
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| ID | 5613665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5315003 |
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| End bp | 5316100 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640935308 |
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| Product | tRNA (uracil-5-)-methyltransferase |
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| Protein accession | YP_001476068 |
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| Protein GI | 157377468 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000970213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000154992 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATTTAG CAGCAATGGA TCCTAATACC TATGATGCGC AACTCGAAGA AAAACGTATC
AAGCTGGAAC AGATATTCAC TGATTTTGAT ACGCCAAAGC TAGAAGTTTT TAGTTCCGAA
CCGGCTCATT ATCGTATGCG TGCCGAATTC CGCATATGGC ATGACGGTGA GGACATGTAC
TACTACATGT TTGATAAAGC ACTCGACAGC AAAGTCCGTT GCGATCAATT TCTCCCTGCT
AGTGAATTGA TCAATAAGGT GATGCCAGCC CTTATGGAAG AGTTAAGGCC CAATCCAACT
CTGAGACATA GGTTATTCCA GATAGATTTC TTATCAACGC TTAGTGGCGA AATCTTAGTG
TCTTTGTTGT ATCACAAGCA ACTTGATGCA CAGTGGGAGA TTGAAGCTAA AGCCTTAAAA
GAGAAGTTAG CAGCCACTTT CAACATCAAT ATTATTGGTC GAGCTCGTAA ACAGAAACTG
ATCATAGACA AAGACTTTGT CATCGAGTCA TTAACTGTCA ATAACGAACA GCTTCAATAT
CATCAGATTG AAAATAGCTT TACCCAACCT AATGGTAAAG TCTCGGTGAA GATGTTGGAG
TGGGCTATTG ATGTCACTAA AAATAGCCAA GGCGATCTAC TGGAGCTTTA TTGTGGTAAT
GGTAATTTTT CAATTGCCCT GGCACAAAAT TTCGATCGCG TATTAGCCAC CGAACTCGCA
AAACCTTCGG TTGAGTCCGC ACAATACAAT ATCAAGATAA ATAAGATCGA CAACCTGCAG
ATCATCCGTA TGTCGGCAGA AGATTTTACC GATGCAATGG CAAAGAAGCG TACCTTCAGA
CGCCTGGAGG GGATCGATTT AGATAGCTAC AACTGTAATA CCATCTTCGT TGACCCACCT
AGAGCAGGTA TGGATCCAGA TACCGTTAAG CTGGTGCAAG GCTACGATCG TATCGTTTAT
ATCTCTTGTA ACCCGAATAC TTTAATCGAC AACTTAGCTG AGCTGAGCAA AACACATAAG
ATCACGCGCT TTGCTCTATT TGACCAATTC CCATATACAG ATCATATGGA ATCGGGAGTC
TTCTTAGAGA GACGCTAA
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| Protein sequence | MNLAAMDPNT YDAQLEEKRI KLEQIFTDFD TPKLEVFSSE PAHYRMRAEF RIWHDGEDMY
YYMFDKALDS KVRCDQFLPA SELINKVMPA LMEELRPNPT LRHRLFQIDF LSTLSGEILV
SLLYHKQLDA QWEIEAKALK EKLAATFNIN IIGRARKQKL IIDKDFVIES LTVNNEQLQY
HQIENSFTQP NGKVSVKMLE WAIDVTKNSQ GDLLELYCGN GNFSIALAQN FDRVLATELA
KPSVESAQYN IKINKIDNLQ IIRMSAEDFT DAMAKKRTFR RLEGIDLDSY NCNTIFVDPP
RAGMDPDTVK LVQGYDRIVY ISCNPNTLID NLAELSKTHK ITRFALFDQF PYTDHMESGV
FLERR
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