| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4334 |
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| Symbol | |
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| ID | 5610495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5304812 |
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| End bp | 5305774 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640935298 |
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| Product | biotin--protein ligase |
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| Protein accession | YP_001476064 |
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| Protein GI | 157377464 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
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| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.152634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000217796 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTGAAC AATGGGAAAG AAAACGCGCC ATCATAGCGA CGCTTAACTC CGGAGGCTTT
GTGTCTGGTG AGGTCTTGGC CAAGCAAGCT GGAATATCAA GAACTGCGAT TGGTAAACAC
ATTTCCGCGT TAGAAGAGTA CGGCGTCGAA ATCTATAGTG TTAAAGGTAA GGGCTACAAA
CTTGCTAATA CTATTTCACT CATAGATGAA AAGAAATTAA CATCAGCAAT TAATCAACGT
TGTTTTTATT TCGATGAAAT CTCGAGCACT AATGCATTTT TCCTTAAGAA CGTCGATGAG
CTTAACTCTG GTGATATCTG TGTAACAGAA TATCAATCGG CCGGCAGAGG AAGACGTGGA
AGAACTTGGG TTTCTCCCTA TGGATGCCAC CTTTATTGTT CAATGTACTG GAACTTATCT
CAAGGAATGG CGCAGGCGGC GGGCTTAAGT CTTGTCGTTG CCTGTTCTTT AGTAAAGACA
TTGGAGTCCT TCAAAATCGA GGGCCTAGGT GTCAAGTGGC CTAATGACAT CTACCTTAAT
GAAAGGAAAC TTGCCGGCGT ATTGATAGAG ATGAATGGGC AGGCGGATAG CCATTGTCAC
TTGGTCATAG GGATCGGGAT AAATGTTTCG ATGTCTGAAG CTCAGGGTGA GAAGATTGAT
CAACCATGGA GTGACTTGTC ACTTCAGAAC CCAAGTCTGA ATAAGACAGA TTTGATGGTG
GCCCTACAGA AACAACTACA TCAAGACCTG ATCGAATTCG AATCTCATGG TATGAAAGTC
TTCTTACCAA GGTGGCAAGA GATAGATATC TTTTATGGTA AAGAGGTCAA GTTATTGATG
GGAGAAAATC AAGTGCTTGG TATCTGTCGC GGAATCGATG AGACTGGAGC TATTCTGCTC
GATACAAATA ATGGGTTAGA AGCCTTTGTT GGCGGTGAAA TCAGTCTAAG AAGCGCTGTC
TAG
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| Protein sequence | MIEQWERKRA IIATLNSGGF VSGEVLAKQA GISRTAIGKH ISALEEYGVE IYSVKGKGYK
LANTISLIDE KKLTSAINQR CFYFDEISST NAFFLKNVDE LNSGDICVTE YQSAGRGRRG
RTWVSPYGCH LYCSMYWNLS QGMAQAAGLS LVVACSLVKT LESFKIEGLG VKWPNDIYLN
ERKLAGVLIE MNGQADSHCH LVIGIGINVS MSEAQGEKID QPWSDLSLQN PSLNKTDLMV
ALQKQLHQDL IEFESHGMKV FLPRWQEIDI FYGKEVKLLM GENQVLGICR GIDETGAILL
DTNNGLEAFV GGEISLRSAV
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