| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4327 |
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| Symbol | rplA |
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| ID | 5609809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5299509 |
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| End bp | 5300210 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935290 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_001476059 |
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| Protein GI | 157377459 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000769687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000219942 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAAAGC TAACTAAACG CGCTCGCTTG ATTCGCGAAA AAGTAGAAGT AACTAAAAAC
TACGACATCA ATGAAGCTGT TGCACTACTT AAGGAACTAG CTACTGCTAA GTTCGTTGAG
AGTGTTGATG TAGCGGTTAA CCTAGGTGTT GACCCACGTA AATCTGACCA AAACGTTCGT
GGCGCTACAG TGCTACCACA CGGTACAGGT CGTGACGTTC GCGTTGCTGT GTTTACACAA
GGCGCTAACG CTGAAGCTGC TACTGCTGCT GGTGCAGAAC TTGTCGGAAT GGACGAGCTT
GCTGCACAAG TTAAAGCTGG TGAAATGAAC TTCGACGTAG TTATTGCTTC TCCTGATGCA
ATGCGCGTAG TTGGTCAGCT AGGTCAAATC TTAGGCCCAC GTGGTCTAAT GCCTAACCCT
AAGACTGGCA CTGTAACACC AAACGTTGCT GAAGCTGTTA AGAATGCGAA AGCTGGTCAG
GTTCGCTACC GTACTGATAA GAACGGTATC ATCCACACTA CTATCGGTAA AGTGGACTTC
GAAGCTGCTC AAATTAAAGA AAACTTGGAA GCACTGATTG GAGCACTAGT GAAAGCTAAG
CCTGCTGCAG CTAAAGGTGT TTTCTTGAAG AAAGTTAGCA TCTCTACCAC TATGGGTGCA
GGTGTTGCTG TTGACCAGAG TACTCTGGAC GACGCTAAGT AA
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| Protein sequence | MAKLTKRARL IREKVEVTKN YDINEAVALL KELATAKFVE SVDVAVNLGV DPRKSDQNVR
GATVLPHGTG RDVRVAVFTQ GANAEAATAA GAELVGMDEL AAQVKAGEMN FDVVIASPDA
MRVVGQLGQI LGPRGLMPNP KTGTVTPNVA EAVKNAKAGQ VRYRTDKNGI IHTTIGKVDF
EAAQIKENLE ALIGALVKAK PAAAKGVFLK KVSISTTMGA GVAVDQSTLD DAK
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