| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4323 |
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| Symbol | |
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| ID | 5614129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5289761 |
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| End bp | 5293978 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935286 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001476055 |
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| Protein GI | 157377455 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000946538 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CCGAAGAGTT TAACGGCATT
AAGATTGGCC TAGCGTCGCC AGATCTAATC CGTTCTTGGT CATTTGGTGA AGTTAAGAAG
CCAGAAACCA TTAACTACCG TACCTTTAAG CCTGAGCGTG AAGGCTTATT CTGTGCGCGT
ATTTTTGGTC CAGTAAAAGA TTACGAATGT TTATGCGGTA AGTATAAGCG TCTTAAGCAC
CGTGGTGTGA TCTGTGAAAA GTGTGGCGTT GAAGTTACAC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATCGATCT CGCTAGCCCA GTAGCCCATA TCTGGTTCTT GAAGTCACTG
CCGTCTCGTA TCGGTTTGAT GCTGGATATG ACTCTGCGTG ACATCGAACG CGTTCTTTAC
TTCGAATCTT TCGTTGTAAT CGAGCCTGGC ATGACCAGCC TTGAGCGCGG CCAGATGTTG
ACAGAAGAAA ACTACCTGGA TGCACTCGAA GAGTACGGTG ATGAGTTTGA AGCCAAGATG
GGTGCTGAAG CAGTTCTAGA ATTGCTACGC GCTATCGAGC TTGAAAAAGA GATTGAGATG
ATGCGCGAAG AGTTGCCATC AATCAACTCT GAGACTCGTC GTAAGAAGAT CACTAAGCGT
CTTAAGCTTG TTGAGGCATT CTTCCAATCG GGCAACAAGC CTGAGTGGAT GATCCTTAAA
GTCTTGCCGG TTCTTCCACC AGATCTACGT CCACTAGTTC CACTGGATGG CGGTCGTTTT
GCTACGTCTG ATCTGAACGA TCTTTATCGT CGTGTGATCA ACCGTAACAA CCGTCTTAAG
CGTCTGTTAG ATCTAGCTGC GCCAGATATC ATCGTACGTA ACGAAAAGCG TATGTTGCAA
GAATCTGTCG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCAATTAC GGGTTCTAAC
AAGCGTCCGC TTAAATCTTT GGCCGATATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG
AACTTGCTAG GTAAGCGTGT GGATTATTCT GGTCGTTCGG TAATTACCGT AGGTCCAACA
CTTCGCTTAC ATCAGTGTGG TCTTCCTAAG AAGATGGCAC TCGAGCTATT TAAGCCTTTC
ATCTATGGCA AGCTAGAAGG TCGTGGTCTT GCTACTACGA TTAAAGCTGC TAAGAAGATG
GTTGAGCGTG AAGTACCTGA AGTTTGGGAT GTTCTTGACG ATGTTATTCG TGAACACCCT
GTAATGCTCA ACCGTGCGCC AACACTGCAC AGACTGGGTA TTCAAGCGTT TGAGCCTGTA
TTGATTGAAG GTAAAGCTAT TCAGCTTCAT CCTTTGGTTT GTGCGGCCTA CAACGCCGAC
TTCGATGGTG ACCAAATGGC TGTACACGTG CCGCTAACGC TGGAAGCTCA GCTAGAAGCA
CGTTCGCTTA TGATGTCAAC CAACAACATC CTTTCGCCAG CAAACGGCGA GCCGGTTATC
ACACCGTCAC AGGACGTTGT ATTAGGTCTG TATTACACCA GCCGTGAGTG CGTTAACGGC
AAAGGCGAAG GCATGGTGTT TGAATCAGTC GATGAAGTCG AAAAGGCTTA CCGTACTAAG
TTCGCAGCAA TCCATGCTCG CGTAAAAGTA CGTATCACTG AAACTAATAT CGATGAAAAT
GGTGAGCGTT CAGAATCTCG TCGTATCGTT GATACAACGG TTGGTCGTGC ACTGCTTTCT
CGCATTCTGC CGAAAGGGTT GTCATATGAT CTGGTTAACC AGAACATGGG CAAAAAGCAG
ATCTCTAAGC TGTTGAACAC TTGTTACCGT CAACTAGGTC TTAAAGATAC CGTTATCTTT
GCAGATCAAT TGATGTATGC CGGTTTCCAT TATGCGACTG TATCGGGTGC CTCTGTAGGT
ATCAATGATA TGGTTATTCC AGATGAGAAG TACACTCTGG TTGCCGATGC CGAGGCTGAA
GTTCTTGAAA TTCAAGAGCA GTTCCAATCG GGTCTGGTTA CCGCCGGTGA GCGCTATAAC
AAGGTCATCG ATATCTGGGC AAGTGCGAAC GAGAAAGTCT CTAAGGCCAT GATGGAAAAC
CTGTCTTCTG AGACAGTGAT TAACCGTGAA GGTGTGCCTG AGAAGCAAGA GTCATTCAAC
AGCATCTATA TGATGGCAGA CTCGGGCGCT CGTGGTAGTG CTGCACAGAT TCGTCAGTTA
GCGGGTATGC GTGGTCTGAT GGCTAAGCCG GATGGCTCAA TCATCGAAAC ACCGATTGTA
GCTAACTTCC GTGAAGGTCT AAACGTATCT CAGTACTTTA TCTCTACTCA CGGTGCGCGT
AAGGGTCTTG CCGATACGGC ACTTAAGACA GCTAACTCGG GTTACTTGAC TCGTCGTCTT
GTAGACGTTG CACAGGATCT TGTAGTTATC GAAGATGACT GTGGCACCTT CGAAGGTCTG
ACAATGAAGC CTCTCATCGA GGGTGGTGAT GTTGTTGAGC CATTGCGTGA GCGTGTACTT
GGTCGTGTTG TTGCTATCGA TGTGATGTAT CCAGGTACTG AGAAGGTACT TGCACCTCGT
AACACTCTGC TTGATGAAGC TTGGTGTGAC TTGTTGGAAG AACATTCAGT CGATGAGATG
ATCGTTCGTT CAGTTATCAG CTGTGATACA GACTTTGGTG TTTGTAAAGC CTGTTATGGT
CGTGATTTGG CTCGTGGTCA TATCATTAAC CAAGGTGAAG CAATCGGTGT TGTTGCTGCT
CAGTCAATTG GTGAGCCAGG AACACAGCTA ACGATGCGTA CCTTCCACAT TGGTGGTGCG
GCGTCTCGAG CTTCTGCTGA AAACAACGTT CAAGTTAAGA ACGCTGGTAC TGTTAAGCTG
CATAATGCTA AGCACGTGAC TAACAGCGAA GGCAAGTTAG TTATCGTTTC TCGTTCTTCT
GAGATCGCCA TTATTGACGA ACTTGGTCGT GAGAAAGAGC GTTACAAGGT GCCATACGGT
ACTATTCTGG AAAAGCTTGA AGAAGCGTCT GTAGCGGCTG GCGAAATCAT CGCTAACTGG
GATCCACATA CTCACCCAAT TATTTCTGAA GTAGCGGGTA GTATTAAGTT CGTTGATATG
CTTGATGGCG TCACTATGAC ACGTCAAACA GATGAGCTGA CAGGTCTTTC TTCAATCGTG
GTTATGGAAG TGGGTCAACG TCCTACTGCC GGTAAAGAGA TGCGTCCAGC GATTCGTCTG
GTTGGTGCCG ATGGCAACGA CTTGATGATC CCAGGAACAG AGGTTCCTGC GCAATACTTC
TTACCAGCTA ACGCGATTGT GAATCAAGAT GATAATGCAC CAATTAACGT TGGTGATGCA
TTAGCACGTA TTCCGCAAGA ATCGTCAAAG ACCCGTGATA TTACCGGTGG TCTACCTCGC
GTTGCCGACT TGTTCGAAGC GCGTAAGCCA AAAGAGCCAG CTATTCTTGC TGAGTACTCA
GGTACTATCT CGTTTGGTAA AGAGACTAAA GGTAAGCGTC GTCTTGTGAT CACGCCTGCT
GATGGTAGCG AAGCTTATGA AGAGATGATT CCTAAGTGGC GTAACCTGAA TGTGTTCGAA
GGTGAAAAAG TCGAACGCGG TGAGGTTATT GCTGATGGTG CTGAAGCAGC ACATGACATC
TTGCGTCTAC GTGGCATTCA TAAGGTTGCT AACTACATCG TTAATGAAGT TCAAGACGTA
TATCGTCTAC AGGGCGTAAA GATTAACGAT AAGCATATCG AAGTGATTAT TCGCCAGATG
CTTCGTAAGT GTGAAATCAC TAACGCTGGT GATAGTCAGT TCCTTGCTGG TGAACAGGCT
GAAGTGTCTC GTGTTAAGAT CGCAAACCGC GAACTTGAAG CGCAAGGCAA GCAACCTGCA
ACATTCGAAC GTGAGCTTCT TGGTATTACC AAGGCGTCTC TGGCTACAGA GTCATTTATC
TCTGCAGCAT CGTTCCAGGA AACGACACGC GTACTGACCG AAGCGGCAGT AGGCGGTAAG
AGTGATAAGC TACGCGGTCT TAAAGAGAAC GTGATTGTTG GTCGTCTTAT CCCTGCGGGT
ACTGGTTATT CATATCACCA GAAACGTAAT GCAGCAGCTG CAGCCGGTAC AACTACCGAA
GCGGCACCTG CAATTAGCGC AAGTGAAGCG GAACAGAACC TGGCAGATCT TCTAAATCTT
GCCGGAAGTT CAGATTAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEENYLDALE EYGDEFEAKM
GAEAVLELLR AIELEKEIEM MREELPSINS ETRRKKITKR LKLVEAFFQS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVPEVWD VLDDVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RSLMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRECVNG KGEGMVFESV DEVEKAYRTK
FAAIHARVKV RITETNIDEN GERSESRRIV DTTVGRALLS RILPKGLSYD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYAGFH YATVSGASVG INDMVIPDEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSSETVINRE GVPEKQESFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIV ANFREGLNVS QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTFEGL TMKPLIEGGD VVEPLRERVL
GRVVAIDVMY PGTEKVLAPR NTLLDEAWCD LLEEHSVDEM IVRSVISCDT DFGVCKACYG
RDLARGHIIN QGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNAGTVKL
HNAKHVTNSE GKLVIVSRSS EIAIIDELGR EKERYKVPYG TILEKLEEAS VAAGEIIANW
DPHTHPIISE VAGSIKFVDM LDGVTMTRQT DELTGLSSIV VMEVGQRPTA GKEMRPAIRL
VGADGNDLMI PGTEVPAQYF LPANAIVNQD DNAPINVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEYS GTISFGKETK GKRRLVITPA DGSEAYEEMI PKWRNLNVFE
GEKVERGEVI ADGAEAAHDI LRLRGIHKVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCEITNAG DSQFLAGEQA EVSRVKIANR ELEAQGKQPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDKLRGLKEN VIVGRLIPAG TGYSYHQKRN AAAAAGTTTE
AAPAISASEA EQNLADLLNL AGSSD
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