| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4317 |
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| Symbol | rplC |
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| ID | 5613806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5283867 |
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| End bp | 5284505 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935280 |
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| Product | 50S ribosomal protein L3 |
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| Protein accession | YP_001476049 |
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| Protein GI | 157377449 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000715109 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000579905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGCTATCG GTCTTATCGG TCGTAAAGTG GGTATGACTC GCATCTTCGC TGAAGATGGT
GTGTCTATTC CAGTTACAGT AATTGAAATC GCTTCTAACC GTGTTACTCA GGTGAAAACC
TTAGAAACTG ACGGTTACCG TGCACTTCAA GTTACTACTG GTACCAAAAA AGCTAATCGC
ATCACTAAAC CAGAAGCAGG TCACTTTGCT AAGGCAGGCG TTGAAGCCGG TCGTGGTTTG
TGGGAAGTGC GTTTGGCAGA TGGTGAAGGC GAAAGCATTG AAGTTGGTGC TGAGCTAAAT
GTTGATATCT TCGCTGACGT AGCGAAAGTT GATGTTACTG GTCAATCTAA AGGTAAGGGC
TTCCAAGGCG GTATTAAGCG TTGGAACTTC CATGCACAAG ACATGACACA CGGTAACTCA
CTGGCACATA GATCCAACGG TTCTATCGGT CAAAACCAGA CACCTGGTCG CGTTTTCAAA
GGTAAGAAAA TGTCAGGCCA CATGGGTGCA GAGCGTGTTA CAACGCAGAA TCTAGACGTT
GTACGTGTAG ATGCAGAGCG TAACTTGCTA CTGGTTAAGG GTGCTGTTCC GGGAGCCACA
AATGGCAACC TGATCATCAA ACCTGCCGTT AAAGCTTAG
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| Protein sequence | MAIGLIGRKV GMTRIFAEDG VSIPVTVIEI ASNRVTQVKT LETDGYRALQ VTTGTKKANR
ITKPEAGHFA KAGVEAGRGL WEVRLADGEG ESIEVGAELN VDIFADVAKV DVTGQSKGKG
FQGGIKRWNF HAQDMTHGNS LAHRSNGSIG QNQTPGRVFK GKKMSGHMGA ERVTTQNLDV
VRVDAERNLL LVKGAVPGAT NGNLIIKPAV KA
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