| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4316 |
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| Symbol | rplD |
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| ID | 5609843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5283245 |
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| End bp | 5283850 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935279 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_001476048 |
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| Protein GI | 157377448 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000585754 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000669948 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGAATTGG TATTGAAAGA CGCACAAAGT GCTCTGGAAG TTTCCGAAAC TACCTTCGGC
CGTGACTTTA ATGAAGCACT GGTTCATCAG GTAGTTGTAG CTTATGCTGC AAACGCACGT
CAGGGCACTC GTGCTCAAAA GACTCGTGCG GAAGTTATTG GCTCTGGCAA AAAGCCATGG
CGCCAAAAAG GTACTGGCCG TGCACGTGCC GGTACTGTTA AAGGCCCGAT CTGGCGTGGC
GGTGGCGTAA CATTCGCTGC TAAAGCTCAA GATCACAGCC AAAAAGTAAA CAAGAAGATG
TACCGCGGAG CGCTGAAAAG CATATTCTCT GAATTGGTAC GTCAAGACCG TCTTATCGTG
GTTGAGTCGT TTAGTGTTGA AGCTCCTAAA ACTAAAGAGC TTAAAGCTAA ATTGGCTGAA
ATGAACCTGG AAGACGTGTT GATTGTTACT CCAGAAATTG ACGAGAACTT GTTCTTGGCT
GCTCGCAACT TGTACAAAGT TGACGTTCGT GATGTTGCTG GTATTGATCC AGTTAGCCTT
ATCGCGTTCA ACAAAGTACT AGTCACTGCC GATGCTGTTA AGCAAATCGA GGAGATGCTG
GGATGA
|
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| Protein sequence | MELVLKDAQS ALEVSETTFG RDFNEALVHQ VVVAYAANAR QGTRAQKTRA EVIGSGKKPW
RQKGTGRARA GTVKGPIWRG GGVTFAAKAQ DHSQKVNKKM YRGALKSIFS ELVRQDRLIV
VESFSVEAPK TKELKAKLAE MNLEDVLIVT PEIDENLFLA ARNLYKVDVR DVAGIDPVSL
IAFNKVLVTA DAVKQIEEML G
|
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