| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4311 |
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| Symbol | rpsC |
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| ID | 5613487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5280768 |
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| End bp | 5281457 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935274 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_001476043 |
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| Protein GI | 157377443 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000643505 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000545426 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGGACAGA AAGTACATCC TAATGGTATC CGTCTGGGTA TCACTAAGCC TTGGATCTCG
ACCTGGTACG CTGACAAGTC AGACTATGCC AATAACTTAA CTAGTGACAG TGAAGTGCGT
AAGTTTCTTG AAAAGAAACT TAAGCAAGCA TCAGTTTCTA AGATTGTTAT CGAGCGTCCA
GCAAAGAGTG TTCGCGTTAC TATTCACACT GCCCGTCCAG GTGTTGTGAT TGGTAAGAAA
GGCGAAGACG TTGAGAAGCT ACGCAACGCA GTTGCTAAGC TGACTGGTAT TCCAGCTCAA
ATCAACATCG CTGAGATCCG TAAGCCTGAG CTAGATGCTA AGCTTGTTGC CGATGGCATC
GCTTCGCAGC TAGAGCGTCG TGTTATGTTC CGTCGTGCTA TGAAGCGCGC AGTACAAAAT
GCAATGCGTC TTGGTGCTAA AGGTATCAAG GTTCAAGTTG GCGGCCGTCT AGGCGGTGCT
GAGATTGCGC GTTCTGAGTG GTATCGTGAA GGTCGTGTAC CTCTACATAC ACTGCGTGCT
GATATCGACT ATTCTACTGC AGAGAGTCAC ACTCAATACG GTGTGATTGG CGTTAAAGTT
TGGGTCTTCA AAGGTGAAGT TCTAGACGGC GTTGTTCCTG CGCATGAAGA GCCGAAACAG
CAGCCGAAGC GTAAGCCTCG CGGTAAATAG
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| Protein sequence | MGQKVHPNGI RLGITKPWIS TWYADKSDYA NNLTSDSEVR KFLEKKLKQA SVSKIVIERP
AKSVRVTIHT ARPGVVIGKK GEDVEKLRNA VAKLTGIPAQ INIAEIRKPE LDAKLVADGI
ASQLERRVMF RRAMKRAVQN AMRLGAKGIK VQVGGRLGGA EIARSEWYRE GRVPLHTLRA
DIDYSTAESH TQYGVIGVKV WVFKGEVLDG VVPAHEEPKQ QPKRKPRGK
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