Gene Ssed_4305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4305 
SymbolrplE 
ID5613332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5278485 
End bp5279024 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content46% 
IMG OID640935268 
Product50S ribosomal protein L5 
Protein accessionYP_001476037 
Protein GI157377437 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0094] Ribosomal protein L5 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000316279 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000574011 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCGAAAC TGCATGATAA ATATCAAGAG ACTGTTAGTC CTGAACTTGC TAAAAAGTTC 
GGTTTTACCA GTGTCATGCA AGTCCCTCGG ATTGAGAAAA TCACCCTTAA CATGGGTGTT
GGCGAAGCAG TAGCAGATAA GAAAGTTATG GAGCATGCGC TTCGTGACAT GACTGCTATC
GCTGGTCAAA AGCCGGTTGT GACTGTAGCT CGTAAGTCAG TGGCTGGTTT TAAAATCCGT
GATGGCTACC CGATAGGCTG TAAGGTTACA CTGCGCGGTG AGCGTATGTG GGAATTCTTA
GAGCGTTTAG TTGATATCGC AATCCCGCGT ATTCGTGATT TCCGTGGTAT GAGCGCTAAG
TCGTTCGATG GCCGTGGTAA CTACGCAATG GGTGTACGTG AGCAGATTAT CTTCCCTGAG
ATCGAATACG ATAAAATCGA TAAGATCCGT GGTATGGATA TTGTGATCAC TACTTCTGCG
AAGAATGACG AAGAAGGCCG AGCTCTGCTT GAAGCCTTTA ACTTCCCATT CAAGAAATAA
 
Protein sequence
MAKLHDKYQE TVSPELAKKF GFTSVMQVPR IEKITLNMGV GEAVADKKVM EHALRDMTAI 
AGQKPVVTVA RKSVAGFKIR DGYPIGCKVT LRGERMWEFL ERLVDIAIPR IRDFRGMSAK
SFDGRGNYAM GVREQIIFPE IEYDKIDKIR GMDIVITTSA KNDEEGRALL EAFNFPFKK