| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4302 |
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| Symbol | rplF |
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| ID | 5611505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5277211 |
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| End bp | 5277741 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935265 |
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| Product | 50S ribosomal protein L6 |
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| Protein accession | YP_001476034 |
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| Protein GI | 157377434 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0097] Ribosomal protein L6P/L9E |
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| TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000025349 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000636307 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGTCTCGTG TCGCAAAAGC ACCAGTCGCT ATTCCTGCAG GCGTAGAAGT GACTCTAAAC
GAACAAACTA TCACCGTAAA AGGTACTAAA GGTAGTTTGA CTCGAGTAAT AAACGCTGAC
GTTTCTGTTG TTGTTGAAAA CAACGAAATT AAGTGTAGTT CTGTCGAAGG CGTTAAAACT
AACGCTCAAG CGGGTACAGC TCGAGCTCTA ATCAACAACA TGGTTGTTGG TGTAACAGCT
GGTTTTGAGA AAAAACTTCA GTTAATTGGT GTCGGTTACC GTGCGAAAAT CGCTGGTAAA
GGCGTTGATT TGACTCTAGG TTTCTCTCAC CCACTAGTAC ACGAACTCCC AGACGGCGTA
ACAGCTGTTT GTCCTTCACA AACTGAAATC GTACTTTCTG GTACTGATAA GCAGCTTGTT
GGACAAGTAG CAGCTGAGAT TCGCGGCTAC CGTCCACCAG AGCCTTATAA AGGTAAAGGT
GTTCGCTATG CTGACGAACA AGTACGTCGT AAAGAGGCTA AGAAGAAGTA G
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| Protein sequence | MSRVAKAPVA IPAGVEVTLN EQTITVKGTK GSLTRVINAD VSVVVENNEI KCSSVEGVKT
NAQAGTARAL INNMVVGVTA GFEKKLQLIG VGYRAKIAGK GVDLTLGFSH PLVHELPDGV
TAVCPSQTEI VLSGTDKQLV GQVAAEIRGY RPPEPYKGKG VRYADEQVRR KEAKKK
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