| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4300 |
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| Symbol | rpsE |
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| ID | 5612775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5276333 |
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| End bp | 5276836 |
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| Gene Length | 504 bp |
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| Protein Length | 167 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935263 |
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| Product | 30S ribosomal protein S5 |
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| Protein accession | YP_001476032 |
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| Protein GI | 157377432 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0098] Ribosomal protein S5 |
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| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000220088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000604487 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGCTAAAT TCGAAGCACA GCAAAAAGAC GATCTGCAAG AGAAACTAGT TGCAGTTAAT
CGTGTTTCTA AAGTAGTTAA AGGCGGACGT ATCTTTAGCT TCACTGCACT AACAGTAGTG
GGTGACGGTA ACGGTAAAGT CGGCTTTGGC TATGGTAAAG CGCGTGAAGT ACCAGCAGCA
ATTCAGAAAG CAATGGAAAA GGCTCGCCGT AACATTGTTT CTGTTGAATT GATCAATGGT
ACTCTGCACC ACCCTGTAAA GGGCCGTCAC ACTGGATCGC GTGTTTACAT GCAACCAGCA
TCAGACGGTA CCGGTATTAT TGCCGGTGGC GCAATGCGTG CCGTATTGGA AGTAGCAGGC
GTTCATAACG TTCTGTCAAA AGCATACGGT TCTACTAACC CGATCAACAT CGTTCGCGCA
ACTGTAGATG CGTTGGTGCA CATGAAGTCA CCATCACAAA TTGCAGCTAA GCGTGGCCTT
AATGTTGATG AAATTCGAGG TTAA
|
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| Protein sequence | MAKFEAQQKD DLQEKLVAVN RVSKVVKGGR IFSFTALTVV GDGNGKVGFG YGKAREVPAA
IQKAMEKARR NIVSVELING TLHHPVKGRH TGSRVYMQPA SDGTGIIAGG AMRAVLEVAG
VHNVLSKAYG STNPINIVRA TVDALVHMKS PSQIAAKRGL NVDEIRG
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