| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4293 |
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| Symbol | rplQ |
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| ID | 5613993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5271234 |
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| End bp | 5271632 |
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| Gene Length | 399 bp |
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| Protein Length | 132 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935256 |
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| Product | 50S ribosomal protein L17 |
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| Protein accession | YP_001476025 |
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| Protein GI | 157377425 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0203] Ribosomal protein L17 |
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| TIGRFAM ID | [TIGR00059] ribosomal protein L17 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.285077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000104065 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCGCCATC GTAAGAGTGG TCGTCAACTA AACCGTAACA GCAGTCATCG CCAAGCTATG
TTCCGTAACA TGGCAAGCTC ATTAGTCCGT CACGAAGTGA TCAAGACTAC TGTTGCTAAA
GCGAAAGAAC TGCGTCGCGT AGTTGAACCT CTGATAACAC TTGCTAAGAG TGATAGCGTT
GCAAATCGTC GTTTGGCATT TGCACGTACT CGCGACGCTG AAGTCGTAGG TAAGTTATTC
AATGAATTGG GTCCACGCTA CCAGGAACGT CCTGGTGGTT ACACTCGTAT CCTTAAGTGC
GGTCTACGTA CTGGTGATAA AGCGCCTATG GCGTTTATTG AACTAGTTGG TCGCCCAGAA
GATGCTGAAG CTGTTGAAGC TGATGACTCT GCTGAGTAA
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| Protein sequence | MRHRKSGRQL NRNSSHRQAM FRNMASSLVR HEVIKTTVAK AKELRRVVEP LITLAKSDSV
ANRRLAFART RDAEVVGKLF NELGPRYQER PGGYTRILKC GLRTGDKAPM AFIELVGRPE
DAEAVEADDS AE
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