Gene Ssed_4290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4290 
Symbol 
ID5613509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5269356 
End bp5269553 
Gene Length198 bp 
Protein Length65 aa 
Translation table11 
GC content43% 
IMG OID640935253 
Productheme exporter protein D (CcmD) 
Protein accessionYP_001476022 
Protein GI157377422 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3114] Heme exporter protein D 
TIGRFAM ID[TIGR03141] heme exporter protein CcmD 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000529225 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGTTCG ATTCATTAAC AGATTTTTTT AACATGGGAG GCTATGCCTT CTACGTATGG 
CTGGCTTATG GAGTAACCTT TCTGTCGTTA GGTATTCTCG TAGTTCACAG CCTTGGACAA
AAACGTAAGG TGTTGGTGGG GATCTCGCAA AAAATACAGC GAGAAGAGCG CCTTAAAGAA
AACCGGAGTA CCAAATAG
 
Protein sequence
MQFDSLTDFF NMGGYAFYVW LAYGVTFLSL GILVVHSLGQ KRKVLVGISQ KIQREERLKE 
NRSTK