Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4290 |
Symbol | |
ID | 5613509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5269356 |
End bp | 5269553 |
Gene Length | 198 bp |
Protein Length | 65 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640935253 |
Product | heme exporter protein D (CcmD) |
Protein accession | YP_001476022 |
Protein GI | 157377422 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3114] Heme exporter protein D |
TIGRFAM ID | [TIGR03141] heme exporter protein CcmD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000529225 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCAGTTCG ATTCATTAAC AGATTTTTTT AACATGGGAG GCTATGCCTT CTACGTATGG CTGGCTTATG GAGTAACCTT TCTGTCGTTA GGTATTCTCG TAGTTCACAG CCTTGGACAA AAACGTAAGG TGTTGGTGGG GATCTCGCAA AAAATACAGC GAGAAGAGCG CCTTAAAGAA AACCGGAGTA CCAAATAG
|
Protein sequence | MQFDSLTDFF NMGGYAFYVW LAYGVTFLSL GILVVHSLGQ KRKVLVGISQ KIQREERLKE NRSTK
|
| |