| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4289 |
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| Symbol | |
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| ID | 5613508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5268610 |
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| End bp | 5269356 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935252 |
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| Product | heme exporter protein CcmC |
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| Protein accession | YP_001476021 |
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| Protein GI | 157377421 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
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| TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000743229 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGGAAAT GGCTACATAG TTACGCGGAT CCCGAACGCG CCTATAATTT ATCCGGAAAA
CTCCTCCCTT GGTTCGCCAT GCTGGCAACT GGACTGATAG GTATTGGTTC TGTATGGGGG
CTCGTATTTG CCCCAACCGA CTATCAGCAA GGTGATAGTT ATAGAATCAT CTTTATACAT
GTACCGGCGG CTTCTATGTC TATGGCGGCA TACATGGCGA TGGCCAGCTC TGCTTTTATC
GGACTTGTCT GGCAGATTAA ATCCGCTGAC TGGGCCGCTG CCGCGATTGC CCCCATCGGA
GCTGTAATTA CCTTTATTGC ACTGATTACA GGTGCTACCT GGGGTAAACC TATGTGGGGC
ACTTGGTGGG TCTGGGATGC ACGTTTAACC GCTGAACTGG TACTGCTTTT CCTATATTTA
GGGGTTATAT CTCTTTATGC TTCGTTTGAA GATAAAGTAT TAGCAGCCAG AGCCGCTGGT
ATCTTAGCCA TTGTCGGCGT AATTAATATT CCGATTATTA AATACTCTGT CGAGTGGTGG
AGCTCGCTGC ATCAACCATC AACAATCAAG ATCACTGAGA AATCGAGTAT GTCTTCAGAT
ATGCTCTATC CATTGCTGAT AAATATCGTT GGCTTTGGAA TGATGATAGG TGCAATTACA
TTGATACGAT TCAGAGCCGA AATTTTAGCA AGAAATGGAA TGCGCCCTTG GGTACGGGAA
CTAGCTAAAG CCGAAGGAGT CAAATAA
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| Protein sequence | MWKWLHSYAD PERAYNLSGK LLPWFAMLAT GLIGIGSVWG LVFAPTDYQQ GDSYRIIFIH
VPAASMSMAA YMAMASSAFI GLVWQIKSAD WAAAAIAPIG AVITFIALIT GATWGKPMWG
TWWVWDARLT AELVLLFLYL GVISLYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW
SSLHQPSTIK ITEKSSMSSD MLYPLLINIV GFGMMIGAIT LIRFRAEILA RNGMRPWVRE
LAKAEGVK
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