| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4288 |
|---|
| Symbol | |
|---|
| ID | 5613353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5267922 |
|---|
| End bp | 5268608 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640935251 |
|---|
| Product | heme exporter protein CcmB |
|---|
| Protein accession | YP_001476020 |
|---|
| Protein GI | 157377420 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000664896 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG GCATCAGTTT TAGACAAGCA TTTTTCACAC TTTTAAAACG TGACTTACAA
ATTGCTATCC GTCACAAAGG CGATATATTC AATCCCCTGC TCTTTTTTAT CTTAGTGGTT
ACTCTGTTTC CATTAGGTAT TGGTCCTGAG CCACAAATCT TATCCAGAGT AGCACCAGGA
ATAATCTGGG TTGCGGCCCT GTTGGCCTCA ATGCTTTCGC TGGAGAGATT ATTTAAGGCG
GACTTCGTGG ACGGCAGTCT GGAGCAGATG TTATTAAGCC CGCAACCTCT GCCTTTGATG
GTTTTGGCTA AGGTATTAGC ACATTGGATT TTAACCGGAG TACCGTTAAT ATTAATTGCT
CCGCTATTAG CAGTACTGCT GCACTTAGAT GGCAATAGCT ATGGTGCATT AATGGCAACA
CTAGCTTTGG GTACACCAGT ATTAAGCTTG CTGGGTGCCA TTGGTGTAGC CTTAACGGTA
GGATTACATA AAGGCGGAGT GTTACTCAGC CTGCTTATCC TGCCTTTGTA TATCCCGGTA
CTCATCTTTG CGACCTCAGC AATTGATGCG GCGGGCTTAA ATTTACCCTA CAGTGGCCAT
CTCGCAATCA TAGGTGCGAT GTTGGTCGGT TCATTAATAT TGGCACCTTT TGCAATTGGT
GCATCGCTAA GAGTGAGTAC TAACTAA
|
|---|
| Protein sequence | MKKGISFRQA FFTLLKRDLQ IAIRHKGDIF NPLLFFILVV TLFPLGIGPE PQILSRVAPG
IIWVAALLAS MLSLERLFKA DFVDGSLEQM LLSPQPLPLM VLAKVLAHWI LTGVPLILIA
PLLAVLLHLD GNSYGALMAT LALGTPVLSL LGAIGVALTV GLHKGGVLLS LLILPLYIPV
LIFATSAIDA AGLNLPYSGH LAIIGAMLVG SLILAPFAIG ASLRVSTN
|
|---|
| |