| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4284 |
|---|
| Symbol | |
|---|
| ID | 5612037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5262860 |
|---|
| End bp | 5264839 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640935247 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_001476016 |
|---|
| Protein GI | 157377416 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00184466 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCAG AATTAGGACA CTTATCGTTG ATAATAGGAT TGGCATTCGC TTTCCTGTTA
GCCAGCGTTC CTTTAATTGG TGTTGCACGT AAAGACCAAT ACTTAGTGCG TTATGCTTGG
CCATTAAGTT ATGGCATGTT CTTCTTTATA TTCTTATCCG TCGTTGTTCT TGGTTATAGC
TTCGCTATTG ATGATTTTTC GATAGCATAC GTTGCTCATC ATTCAAATTC ACAACTGCCA
ATTTTCTTTA AGATAGCTGC GGTATGGGGT GGGCATGAAG GCTCATTACT ATTCTGGGTT
TTCTCCCTTT CAGCATGGTC TGCAGCAGTA GCCTATTTCA GTAAATCTAT TGAAGAGGTC
TTCGTTGCTA GGGTACTGGC AGTACTGGCA TTGATTATAA TAGGCTTTAC GCTGTTTATG
ATCTTAACGT CGAGTCCATT TGAGCGTTTG TTCCCTGTGC CAATGGAAGG GCGCGACCTC
AACCCTATGC TTCAGGATGT AGGATTAATT TTCCATCCGC CTATGTTGTA CCTCGGTTAT
GTTGGCTTCG CCGTTAGCTT TGCTTTTGCA ATTGCGGCCT TAATGGGCGG GAGTCTCGAT
TCTGCCTGGG CACGCTGGAG CCGTCCGTGG ACACTCGCGG CTTGGGTATT CCTTACCGGT
GGTATTTCAT TAGGTTCTTG GTGGGCATAT TATGAGCTTG GCTGGGGCGG TTGGTGGTTC
TGGGATCCAG TTGAAAACGC GTCATTTATG CCTTGGTTGA TCGGTACCGC GTTATTGCAC
TCCGTTATTG TTACTGAGAA GCGCGCCGCA TTCCGTAACT GGACGGTATT GCTATCTATC
TTTGCTTTCT CATTGAGCTT GCTTGGTACC TTCATCGTTC GTTCAGGTGT TCTGACTTCA
GTGCATTCAT TTGCAGCAGA CCCAAGTCGA GGCATGTTCA TTCTCTTGCT CCTGGGGCTG
GCAGTCGGCG GTTCGCTCAC CTTATTTGCA TTTAGGGCCA GTGAGATGAA GAGTCCTGCC
CGTTTCGAGC TGAAGTCAAA AGAAACCATG CTGTTAGTGT GTAATATTTT GCTGACGGTA
GCGTGCGGTA CGGTACTTCT GGGTACCTTG TATCCGCTAC TCATCGATGC ACTAAACATG
GGTAAAATTT CCGTAGGACC TCCTTACTTT AACGCAGTGT TTGTGCCTAT CGTTCTTGTA
CTATTTGTCT TTATGGGAAT CGGTCCAAAT ATTCGTTGGA AAAAAACTAA GCCTGGCGAA
TTAAAGGCTA AGTTATTGGT ACCTGCAGTG ATCGCAACGG TTGTTGGTGC GGCAGCTCCT
TTCCTAGCCG ATGGTCAATT CAATATCTGG GTTATGCTGG GTGTGGGTAC CGCTACATGG
GTTACCCTTA CCACGTTAAG AGCAGCCTTC GATATCACCA AAGCTAAAGA TGGCTCGTTT
AGCTTGGCCA GGATGGGAAG AAGTCAGCTG GGTATGATCA TTGCCCATCT GGGTATCGCT
GTTTCTGTCG TAGGTGGAAC AATGGTTTCA AACTACTCGA TAGAGAAAAG TGTACGTATG
GGGCCTGGGA TCAGCCAGGA GCTTGCCGGT TATACCTTTA ACTATATTGA AACTAAGAAT
GTTGTAGGTC CTAACTACAC GGCTCAACAG GGGCAGGTAG AAGTCACTAA AGATGGTGAG
TTTGTCGCAC TGCTAAGACC GGATCGCCGT CAGTACAATG TTCGTACTAT GGACATGACA
GAGGCTGGAA TCGATTGGGG ATTATTCAGA GATCTCTATA TCACAATGGG TGATCCATTG
AGTAGAACTC AGTTTGCTGT TCGTCTGAAC TACAAGCCAT TTGTTCGTTG GTTATGGTTC
GGAAGCATAT TTATGATGGT CGGTGGTTTC TTTGCCGCAT CTGATAAGCG TTATCGTACA
AAGAAAGTAA CAGAGGCATC GAAAGCTGAT GCTCAAAAAG AGAAATTAGC TACGGCTTAA
|
|---|
| Protein sequence | MIPELGHLSL IIGLAFAFLL ASVPLIGVAR KDQYLVRYAW PLSYGMFFFI FLSVVVLGYS
FAIDDFSIAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FSLSAWSAAV AYFSKSIEEV
FVARVLAVLA LIIIGFTLFM ILTSSPFERL FPVPMEGRDL NPMLQDVGLI FHPPMLYLGY
VGFAVSFAFA IAALMGGSLD SAWARWSRPW TLAAWVFLTG GISLGSWWAY YELGWGGWWF
WDPVENASFM PWLIGTALLH SVIVTEKRAA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AVGGSLTLFA FRASEMKSPA RFELKSKETM LLVCNILLTV
ACGTVLLGTL YPLLIDALNM GKISVGPPYF NAVFVPIVLV LFVFMGIGPN IRWKKTKPGE
LKAKLLVPAV IATVVGAAAP FLADGQFNIW VMLGVGTATW VTLTTLRAAF DITKAKDGSF
SLARMGRSQL GMIIAHLGIA VSVVGGTMVS NYSIEKSVRM GPGISQELAG YTFNYIETKN
VVGPNYTAQQ GQVEVTKDGE FVALLRPDRR QYNVRTMDMT EAGIDWGLFR DLYITMGDPL
SRTQFAVRLN YKPFVRWLWF GSIFMMVGGF FAASDKRYRT KKVTEASKAD AQKEKLATA
|
|---|
| |