| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4283 |
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| Symbol | |
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| ID | 5612036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5262285 |
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| End bp | 5262842 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935246 |
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| Product | periplasmic protein thiol--disulphide oxidoreductase DsbE |
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| Protein accession | YP_001476015 |
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| Protein GI | 157377415 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0526] Thiol-disulfide isomerase and thioredoxins |
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| TIGRFAM ID | [TIGR00385] periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.115855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.011449 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAGA GGCTAGTACT ATTTATTCCG TTGGTATTAT TCTTAGTTAT GGGAGTCTTC
CTTTATAAGG GACTCTTCCT TAATCCACAG AATCTAGACT CTGCACTGGA GGGAAAGCCG
ATACCGGCTT TCCAGCTAGA GCGTCTTGAG GACCGTGGTG ATTTAATTAC AAACGAAAGC
TTAAAAGGTC ATGTTTCATT ATTGAATGTA TGGGCTACAT GGTGCCCATC TTGTAAGTAT
GAACATCCTT ACCTGATGAG ATTAGCAAGA CAAAATATCT TGCCAATCTA CGGTATTAAC
TATCGTGATG AGCGCGCCAT GGCGATTCGT GAGCTAAACC GTCAGGGCGA CCCTTATACA
GCCAACATTT TCGACCACGA TGGCCGCTTA GGGTTAGACC TTGGTGTTTA TGGTGCTCCG
GAAAGTTACC TGGTCGATCA TAATGGAATT ATTCGTTACC GCTACGCTGG TCCAATCGAT
CAACGCGTCT GGAATGAAAC CTTATTTCCT ATGATTGAAG AACTCCAGGC TGCGGCTAAA
TTGGATGGTG CATCATGA
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| Protein sequence | MKKRLVLFIP LVLFLVMGVF LYKGLFLNPQ NLDSALEGKP IPAFQLERLE DRGDLITNES
LKGHVSLLNV WATWCPSCKY EHPYLMRLAR QNILPIYGIN YRDERAMAIR ELNRQGDPYT
ANIFDHDGRL GLDLGVYGAP ESYLVDHNGI IRYRYAGPID QRVWNETLFP MIEELQAAAK
LDGAS
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