| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4277 |
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| Symbol | |
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| ID | 5611968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5249133 |
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| End bp | 5250284 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935237 |
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| Product | acetylornithine deacetylase |
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| Protein accession | YP_001476009 |
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| Protein GI | 157377409 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01892] acetylornithine deacetylase (ArgE) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00886468 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.333205 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACAC TCCCGGATCT TAAAAGCAAC TTTAGCCAAC TTATTGCTAC CCCTTCAATA
AGCGCCCTCG AAGCCGAACA AGATATGAGC AACCAAGGTG TTATAGACTT ATTGCATAAC
TGGTTTGATG ATTTAGGCTT CCAATGCACA GTGCAGCCGG TGCCAAACAC AAGGAAGAAA
CATAACTTAG TTGCTAGTTT GGGCACTGGA AAAGGGGGCT TACTGCTTGC AGGACACACG
GATACTGTGC CATTTGATGA GGGACGTTGG AGCCAAGATC CATTTAAATT AACGGAAAAA
GATAATCGTT GGTATGGTCT TGGCACCTGC GACATGAAGG GATTCTTTGC TCTGGTATTG
GAAGCCGTTA AAGATATGCC ACTGGCACAA TTTAAACGCC CATTACATAT ACTCGCCAGT
GCCGATGAAG AAACAACCAT GAATGGCGCC AAGTCGTTTG CAGCAGCCAA ATCGATTGCC
CCTGACTATG CAATAATCGG TGAACCCACC AGTTTGAAAC CTGTGTATAT GCATAAGGGG
CACTTAACTC AAGGTATCAG AGTTACAGGT AGAAGCGGAC ACTCCTCCGA TCCGGCTAAA
GGACTTAATG CCATAGAGAT CATGCATCAA GTGATGGGGC AACTACTTAA GTTAAAACAA
CACTTAGCCG ATAACTACCG AGAGGAGGCT TTTAGTGTTC CCTACCCTAC GATGAATTTC
GGTCATATTC ATGGTGGCGA TGCAGCTAAT CGTATCTGTG GATGCTGCGA TCTCCATATC
GACATCCGCC CACTGCCTGG TCTGGCACTG GAAGAGTTAG AACAAATGGT GACCCATTAC
CTCACACCAA TTAATGACAA GTATCCCGGC AGCATTAATG TTGCCCCTCT TTACCCAGGC
TCCGAATCAT TCGCTGGTGA TGCCAATGGT AGCTGGACCC GTCTGGTAGC AGAGTTGTCG
GCAAACGCAC CAGAAGTCGT CAATTATGCC ACCGAAGCCC CCTATATCTC TAAACTTGGT
TGTCAAACAC TCGTATTAGG GCCCGGCAGT ATAGAGCAAG CTCATCAACC CGACGAGTAT
CTCGACATTG CCTATATAGA TCAAACAACA GCCCTACTAA AACAGCTTAT CTATCATGCA
TGTATCAAGT AA
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| Protein sequence | MTTLPDLKSN FSQLIATPSI SALEAEQDMS NQGVIDLLHN WFDDLGFQCT VQPVPNTRKK
HNLVASLGTG KGGLLLAGHT DTVPFDEGRW SQDPFKLTEK DNRWYGLGTC DMKGFFALVL
EAVKDMPLAQ FKRPLHILAS ADEETTMNGA KSFAAAKSIA PDYAIIGEPT SLKPVYMHKG
HLTQGIRVTG RSGHSSDPAK GLNAIEIMHQ VMGQLLKLKQ HLADNYREEA FSVPYPTMNF
GHIHGGDAAN RICGCCDLHI DIRPLPGLAL EELEQMVTHY LTPINDKYPG SINVAPLYPG
SESFAGDANG SWTRLVAELS ANAPEVVNYA TEAPYISKLG CQTLVLGPGS IEQAHQPDEY
LDIAYIDQTT ALLKQLIYHA CIK
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